Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00524 ATGGCGAGCTCCGGCTCTCCGTTCTCCCTTTTGTGTTACGAAGGCGATGACAGCTTGTTGCAAGAGAAAGATGATGAAGACACTGCCATTCAACCAATCAACCAAGGTTTCGATTTAGACAATGACAAagaatatatagagattttgtTCGGAAAGGAAATGGAATTTGTCTCCCAAGGTCCTCCGTTGTCCCCTGATGATATGAGTGCCCGTCTAAAATCCCTTGAGTGGATTTTCAGTACGCAGGAAACTCTCGGGTTCCAAGTTCACACAGCCTATTTAGCGGTGACATACTTTGATCGGTTCTTTTCTAAGCGATCCGTTAATGAAGCTCAACCTTGGGGTGTTCGATTATTATCGTTGGGATGTTTATCTTTGGCAGCAAAGATGGAAGAGCAGAAGGTGCCGTCCCTATGTGATTATCCGGTGGAAGATTATGTCTTCGAGAGCAAAACGATTCAGGATATGGAACTATTGATTTTGAGTTGCTTGGAATGGAAAATGGGAACAGTAACTCCTTTTGCTTATCTGCATTACTTCTTCAAGAAGTTCTGCGGCCAATCAAGACCAGAAGTAATAGTCTGCAGAGCCGTGGAACATGTTCTGGCCATCACAAAAGACGTTAATTCGATGGATCATCGACCTTCCATTATTGCCTCTGCTGCTATATTGGCAGCATTTGATGGTACATTAACAATACAGACCATTAATCATCGGATAAGTGTAATATCATCGTGGGGATCTCTTGAAAGTGATcgtgttttcttttgttataatCTAATGCTGGAAATTGCGAGAAGAacaattattaagaaaactCCTGCCTCTGATGTGATTTCAACTAGTTCGAGCTCTGATTCTGCTCAAGAAGATTCTTCTCTCACTTCAGCCCCTAGAGCTAAGAGAAAACTTGATTTTaaggaagatgatgaagattTTTCCATACAAAAAGTACATAGGTCTTG 965 0.3948 MASSGSPFSLLCYEGDDSLLQEKDDEDTAIQPINQGFDLDNDKEYIEILFGKEMEFVSQGPPLSPDDMSARLKSLEWIFSTQETLGFQVHTAYLAVTYFDRFFSKRSVNEAQPWGVRLLSLGCLSLAAKMEEQKVPSLCDYPVEDYVFESKTIQDMELLILSCLEWKMGTVTPFAYLHYFFKKFCGQSRPEVIVCRAVEHVLAITKDVNSMDHRPSIIASAAILAAFDGTLTIQTINHRISVISSWGSLESDRVFFCYNLMLEIARRTIIKKTPASDVISTSSSSDSAQEDSSLTSAPRAKRKLDFKEDDEDFSIQKVHRS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00524 321 PANTHER CYCLINS 46 298 IPR039361 -
Bva08g00524 321 MobiDBLite consensus disorder prediction 296 321 - -
Bva08g00524 321 PANTHER CYCLIN-D5-1 46 298 - -
Bva08g00524 321 SMART Cyclin_C_2 171 298 IPR004367 -
Bva08g00524 321 MobiDBLite consensus disorder prediction 278 321 - -
Bva08g00524 321 Gene3D - 68 169 - -
Bva08g00524 321 CDD CYCLIN 75 161 IPR013763 -
Bva08g00524 321 SMART cyclin_7 76 162 IPR013763 -
Bva08g00524 321 SUPERFAMILY Cyclin-like 42 168 IPR036915 -
Bva08g00524 321 SUPERFAMILY Cyclin-like 153 279 IPR036915 -
Bva08g00524 321 Pfam Cyclin, C-terminal domain 171 267 IPR004367 -
Bva08g00524 321 Pfam Cyclin, N-terminal domain 68 168 IPR006671 -
Bva08g00524 321 ProSitePatterns Cyclins signature. 71 102 IPR006671 -
Bva08g00524 321 MobiDBLite consensus disorder prediction 278 295 - -
Bva08g00524 321 Gene3D - 170 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00524 Bva-Chr8 2675379 2677560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00524 10 251 Core Cell Cycle Gene Families AT4G37630 35.798 1.24e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00524 K18811 - gmx:100798140 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00524 08 2675379 2677560 Bva08g00524 08 2675379 2677560 ECH
Bva08g00524 08 2675379 2677560 Bva11g01802 11 15940840 15942457 ECH