Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00516 ATGGGGAAGAAGCAGCACAGCAAAGACAGGATGTTCATCACTAAAACAGAGTGGGCAACGGAATGGGGAGGCGCCAAATCCAAAGAAAATCGCACTTCTTTTAAACGTCTTCCATTCTATTGCTGCGCgCTCACGTTTACGCCGTTTGAATATCCTGTATGCACAGCTGATGGGAGCGTTTTTGATGTTATGAATATATCcccttatattataaaatatggaaaGCATCCTGTTACTGGAGCTCCATTGAAGCAGGAGGATCTCATTCCACTAAATTTCCACAAGAATGCCGAAGGAGAATATCAATGTCCTGTGCTAAACAAAGTTTTCACTGAATTTACTCATATCGTAGCTGTGAAGACCACAGGAAATGTGTTCTGCTATGAGGCCATTAAAGAGTTAAACATCAAGACAAAAAACTGGAAGGAGCTGCTCACTGATGAGCCATTCACAAAGGATGATCTTATAACAATCCAGAATCCTAATGCACTTGATACTAAAGTTCTTCTGGATTTTGATcacattaagaaaaatttgaaagttgaaGATGAAGAATTTCAGAAAAAGGCTTCAGATCCAACCTATAATATAAATGTGTCTGGGGATATCAAGCAAATGCTTCAGGAGCTCGGAACTGAGAGAGGAAGGGAAACCGCACTGCATGGAGGAGGTGGTAACAAGGCACAAAAAGAAAGGGCTGCTGCACTTGCTGCCATCTTAGCTGCAAGGTCGCGTCTTAAAGAGGATTCGGAAAAAAGTTCAAATGGAGAGGCTACAACTTCTCAGTCATTTAGTATTGTAGATGCAGCATCTGCTTCAGTTCATGGAAGAAGTGCAGCTGCTGCTAAGGCTTCGTCAAGTGATAAAACTGCTGCTAGGATAGCTCTGCATATGTCCGGTGACAGGGCACCAGTGAATGCAAAGCTTGTCAAGAGCCGTTTCACAACTGGTGCTGCTTCCCGATCCTTCACTTCAACATCTTTTGATCCAGTTACAAAGaatgaatttgaatatgtAAAAGTTGAGAAGAATCCAAATAAGAAAGGCTATGTTCAGCTGCATACAACACATGGTGATTTGAATATTGAACTGCACTGTGATATAACACCCCGAACATGTGAGAATTTTTTCACACTCTGTGAACGTGGATATTATAATGGAGTGGCTTTCCACAGAAACATTAGGAATTTTATGATACAAGGTGGTGATCCTACTGGTACTGGAAGAGGAGGTGAATCAATATGGGGAAAACCTTTTAAAGATGAACTTAACTCCAAATTGGTTCACTCTGGGAGGGGTGTTGTTAGCATGGCAAACAGTGGTCCGCACACCAATGGCTCTCAGTTTTTCATCCTATACAAGTCCGCAAATCATTTGAACTACAAACATACGGTTTTTGGCATGGTTGTTGGTGGCTTGACTACATTAGCTGCCATGGAAAAGGTTCctgttgatgatgatgaccGACCTCTGGAGGAAATTAAGATAACAAGTGTCACAATTTTTGTCAATCCTTACGCAGAaccagatgaagaagaaaagcagGAAAATGATAAGGAGAAGACTGCTGATGATGAAGATAATGATAAGATTGGCTCATGGTATAGCAATCCAGGCGCTGGAACTTCAGAGTCTGGAGGCGTTGGCGGTGTTGGCAAGTACCTGAAAGCTAGGAGTGATCAAGCTGAATCTGCAACTGTTGACACCAGTACAGCCATtgtaggaaagaaaagaaaagcggGAGTTGCTTCTGGTGgatttaaagatttttctgCATGgTA 1781 0.3919 MGKKQHSKDRMFITKTEWATEWGGAKSKENRTSFKRLPFYCCALTFTPFEYPVCTADGSVFDVMNISPYIIKYGKHPVTGAPLKQEDLIPLNFHKNAEGEYQCPVLNKVFTEFTHIVAVKTTGNVFCYEAIKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDTKVLLDFDHIKKNLKVEDEEFQKKASDPTYNINVSGDIKQMLQELGTERGRETALHGGGGNKAQKERAAALAAILAARSRLKEDSEKSSNGEATTSQSFSIVDAASASVHGRSAAAAKASSSDKTAARIALHMSGDRAPVNAKLVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPNKKGYVQLHTTHGDLNIELHCDITPRTCENFFTLCERGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNYKHTVFGMVVGGLTTLAAMEKVPVDDDDRPLEEIKITSVTIFVNPYAEPDEEEKQENDKEKTADDEDNDKIGSWYSNPGAGTSESGGVGGVGKYLKARSDQAESATVDTSTAIVGKKRKAGVASGGFKDFSAW 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00516 593 MobiDBLite consensus disorder prediction 507 531 - -
Bva08g00516 593 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 591 - -
Bva08g00516 593 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 591 IPR044666 -
Bva08g00516 593 CDD cyclophilin_RING 350 508 - -
Bva08g00516 593 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Bva08g00516 593 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Bva08g00516 593 Gene3D - 331 515 IPR029000 -
Bva08g00516 593 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Bva08g00516 593 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Bva08g00516 593 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 500 IPR002130 GO:0000413|GO:0003755
Bva08g00516 593 SUPERFAMILY Cyclophilin-like 350 517 IPR029000 -
Bva08g00516 593 MobiDBLite consensus disorder prediction 505 593 - -
Bva08g00516 593 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Bva08g00516 593 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Bva08g00516 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Bva08g00516 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Bva08g00516 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Bva08g00516 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Bva08g00516 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Bva08g00516 593 SUPERFAMILY RING/U-box 38 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00516 Bva-Chr8 2642656 2647426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00516 1 593 U-box Gene Family AT5G67530 75.167 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00516 K10598 - gmx:100819923 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00516 08 2642656 2647426 Bva08g00516 08 2642656 2647426 ECH