Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00510 atgggTGCACCTAAGCAGAAATGGACTGCAGAAGAAGAAGCCGCACTGAAAGCTGGAGTAGTTAAGCACGGGGCAGGGAAGTGGCGCACTATTCTTACAGACCCAGAGTTCAGCTCCATTTTGCGCATGCGTTCAAATGTGGACCTTAAGGATAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCACTTAAAAGAAACCTTCCAACCCCCAAAAATGACAATAACCAAATGGCCTTGAGTATTGTTGTTCAAGGTGATAATGACGGTCCTGATAATAAGCCTCTGACTGTTTCTGGTGGAACATTGCAGCCTGCTAATTCAAAGGAATCTATATCAAGGTTGgataatcttattttagaGGCTATTATCAATTTGAAGGAGCCAAAGGGTTCTGATAGGGCTGCCATTGCTGCTTTCATAGAGGGTCAATACTTGTCTCCACCAAACCTCAGAAAGTTATTATCAACAAGACTGAAGCATATGGTGGCAACCGGCAAGTTAATAAAGGTAAAACATAAGTACAGGATTGCACAAAGTTCAACTTTCTCGGAGAAAAGAAGATGCTCTCCCCTGTTACTGCTAGAAGGAAGGTCCAAAAACTCTCCAAAAGCAGATAAGACCGATGTGAACCTCCTGTCGAAATCCGAGATTGATGCAGAGCTATCAAAGATGAAGGATATGACAGCCCAAGAGGCTGCTGCGGCTGCTGCAAAAGCAATTGCCGAGGCAGAAGTTGCCATTGCAGAGGCTGAGGCAGCAGCAAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCCAAAGTGTTTGCTAAAGCAGCAATAAAGGCGCTGAAATGCAGAACACTTCATATTTGGTA 887 0.4442 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPTPKNDNNQMALSIVVQGDNDGPDNKPLTVSGGTLQPANSKESISRLDNLILEAIINLKEPKGSDRAAIAAFIEGQYLSPPNLRKLLSTRLKHMVATGKLIKVKHKYRIAQSSTFSEKRRCSPLLLLEGRSKNSPKADKTDVNLLSKSEIDAELSKMKDMTAQEAAAAAAKAIAEAEVAIAEAEAAAREAEAAEAEAEAAKVFAKAAIKALKCRTLHIW 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00510 295 PANTHER SINGLE MYB HISTONE 4 1 294 IPR044597 GO:0003691
Bva08g00510 295 CDD SANT_TRF 6 57 - -
Bva08g00510 295 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva08g00510 295 PANTHER MYB TRANSCRIPTION FACTOR 1 294 - -
Bva08g00510 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Bva08g00510 295 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva08g00510 295 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bva08g00510 295 Coils Coil 242 276 - -
Bva08g00510 295 Pfam linker histone H1 and H5 family 124 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva08g00510 295 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Bva08g00510 295 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bva08g00510 295 MobiDBLite consensus disorder prediction 92 115 - -
Bva08g00510 295 Gene3D - 116 196 IPR036388 -
Bva08g00510 295 SMART sant 4 59 IPR001005 -
Bva08g00510 295 Gene3D - 2 59 - -
Bva08g00510 295 SUPERFAMILY "Winged helix" DNA-binding domain 117 197 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00510 Bva-Chr8 2616489 2620412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00510 1 295 Single Myb Histone (SMH) Gene Family AT5G67580 57.191 8.58e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva08g00510 Linker_histone 3.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00510 K09422 - gmx:778165 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00510 08 2616489 2620412 Bva11g01817 11 16000147 16004005 BWGD