LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g00508	ATGGCTAATCGTAGTTCAATGGCCCAGCCACCCATGTCACTGAAAAACCTAGCAGAAACATGGGTTTCTTCACGTGGCCCCAAATGTTTGCTTCCGAAATTTGGTTCAGGAGCGAGAATTGGAAGACCTGCTTGTGGTTTTATTTCCAGGTTGGAGATAAGAAAAAAGGCTGAGTTTGTAGCTAGAGGCTGTGGGTGCGGCCAAGGTAGTGATGAGACCGAGGGCTATAACACGACAGAGGAAGACGAGCAGTTTGTGAAGGTGCTCCGGGAAGCTCAGCCTTATATTTCTGTGCATAGAGACAGAATCTTTGTGGTGGTCATATCTGCAGAAATGGTTGCTGGTCCTTACTTGGATCCCATTCTTAAGGTAGAATCCCGTTCCCTAAAACCATTAGGTTTAGCTGCCAACATAGGAGCTAAGCGTTACAAGGAAATATTGAGGAAGTGCAATGTGTTCAGCGATGAAGTGGTTGAGAGTGTTGAAGCGGAGAGTTACAACTCTGTGGAAGACAAGCAATTTGTGCGTTGGTTTCGTGAAGCCTGGCCTTACTTATGGGCCCATAGAGGCGGCACCTTTGTTGTGATTATTTCTGGTGAAATTGTCGCTAGTCCTTTCTTAGATGCCATTCTCAAGGATATAGCATTCCTTCATCATCTGGGAATTCGCTTTGTTCTTGTTCCAGGAACCCATGTGCAAATTGATAAGCTTTTGGCTGAGAGAGGGAGCAAGCCTAAATATTTCGGTCGATATAGGATAACTGATGATGAATCCCTAGCTGCTGCAATGGAAGCAGCTGGGGGAATAAGATTGATGATAGAAGCAAAACTTTCTCCTGGACCTTCCATATGCAATATCCGTAGACATGGCGACAATAGTCGATGGCATGAAGTCGGTGTCAGTGTTGCCAGCGGTAACTTCCTTGCAGCCAAGAGAAGGGGAGTTGCTGATGGAATTGATTATGGATCAACTGGGGAAGTTAAAAAAGTAGATGTTTCTCGCATGCGTGAGAGGCTTGATGGCGGTTGTATAGTTATTTTAAGCAACCTGGGCTACTCCAGCTCTGGTGAAGTTTTAAATTGCAACACCTATGAAGTGGCGACAGCTTGTGCCTTAGCTATTGGAGCAGATAAGCTTATTTGCATTATAGATGGTCCGATACTTGATGAGAATGGACGCTTGATGCGTTTCTTGACTCTTCATGAAGCAGACAAGTTGATTCGTAAGCGTGCTGAGCAAAGTGAAACCGCTGCTAACTATGTGAAAGCTGTTGATGAAGAAGGCTTGAGCACGCTTGCGTCTAACAACGCCAATGGAACGGCCCATTCTCCACAGAATGGAAACCCTTTTACTGAAAGGCATATTCCGACCTTTAATAACGGCATTGGTTTTGACAATGGCAATGGCCTATCTGGTGAACAGGGATTCGCTATTGGTGGTCAGGAGCGTCTGAGCAGAATGAATGGTTACCTATCGGAACTGGCTGCTGCGGCATTTGTTTGCAGACAAGGTGTTCAAAGAGTTCACTTGTTAGATGGCACTATTAGTGGAGTTTTGTTGTTGGAATTGTTTAAGAGAGACGGAATGGGAACAATGGTGGCGAGTGACCTTTATGAAGGAACCCGGATGGCTCAGGTGAGAGATCTTCCTGGAATAAAGCAACTTATTCAACCTTTGGAGGCATCTGGCGCATTGGTTAGGCGAACTGATGAAGAGttgCTTCAATCGTTGGATTCCTTCAGCGTTGTGGAAAGAGAAGGTCAAATAATTGCTTGTGCTGCTCTTTTTCCATACTTTGAAGAGAAGTGTGGAGAGGTTGCTGCTATTGCAGTATCTCCTGACTGTCGAGGCCAAGGACAGGGTGATAAACTGCTTGATTATATTGAGAAGAAGGCATCATCTCTGGGATTGAATATGCTTTTCCTGCTTACAACCCGGACAGCTGATTGGTTTGTGAGACGTGGATTCTCAGAATGTTCAATTGATTTGATACcggagaagaaaaggaaaaatatcaatatgtCCCGCAATTCTAAGTATTATATGAAGAAGCTACCACCTAATACAAGTGGAATTACTGTTCATAGGAAATTTGCTTCGCGTTA	2105	0.4409	MANRSSMAQPPMSLKNLAETWVSSRGPKCLLPKFGSGARIGRPACGFISRLEIRKKAEFVARGCGCGQGSDETEGYNTTEEDEQFVKVLREAQPYISVHRDRIFVVVISAEMVAGPYLDPILKVESRSLKPLGLAANIGAKRYKEILRKCNVFSDEVVESVEAESYNSVEDKQFVRWFREAWPYLWAHRGGTFVVIISGEIVASPFLDAILKDIAFLHHLGIRFVLVPGTHVQIDKLLAERGSKPKYFGRYRITDDESLAAAMEAAGGIRLMIEAKLSPGPSICNIRRHGDNSRWHEVGVSVASGNFLAAKRRGVADGIDYGSTGEVKKVDVSRMRERLDGGCIVILSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIIDGPILDENGRLMRFLTLHEADKLIRKRAEQSETAANYVKAVDEEGLSTLASNNANGTAHSPQNGNPFTERHIPTFNNGIGFDNGNGLSGEQGFAIGGQERLSRMNGYLSELAAAAFVCRQGVQRVHLLDGTISGVLLLELFKRDGMGTMVASDLYEGTRMAQVRDLPGIKQLIQPLEASGALVRRTDEELLQSLDSFSVVEREGQIIACAALFPYFEEKCGEVAAIAVSPDCRGQGQGDKLLDYIEKKASSLGLNMLFLLTTRTADWFVRRGFSECSIDLIPEKKRKNINMSRNSKYYMKKLPPNTSGITVHRKFASR	701

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva08g00508	701	SUPERFAMILY	Acyl-CoA N-acyltransferases (Nat)	542	686	IPR016181	-
	Bva08g00508	701	Gene3D	-	172	538	IPR036393	-
	Bva08g00508	701	Hamap	Amino-acid acetyltransferase [argA].	173	685	IPR010167	GO:0004042\|GO:0005737\|GO:0006526
	Bva08g00508	701	TIGRFAM	N-Ac-Glu-synth: amino-acid N-acetyltransferase	493	685	IPR010167	GO:0004042\|GO:0005737\|GO:0006526
	Bva08g00508	701	TIGRFAM	N-Ac-Glu-synth: amino-acid N-acetyltransferase	174	423	IPR010167	GO:0004042\|GO:0005737\|GO:0006526
	Bva08g00508	701	SUPERFAMILY	Carbamate kinase-like	172	409	IPR036393	-
	Bva08g00508	701	Pfam	Amino acid kinase family	193	412	IPR001048	-
	Bva08g00508	701	SUPERFAMILY	Carbamate kinase-like	487	535	IPR036393	-
	Bva08g00508	701	CDD	AAK_NAGS-ABP	173	533	IPR033719	-
	Bva08g00508	701	Pfam	Acetyltransferase (GNAT) family	579	644	IPR000182	GO:0016407
	Bva08g00508	701	Gene3D	-	539	685	-	-
	Bva08g00508	701	PANTHER	AMINO-ACID ACETYLTRANSFERASE	70	123	IPR010167	GO:0004042\|GO:0005737\|GO:0006526
	Bva08g00508	701	PANTHER	AMINO-ACID ACETYLTRANSFERASE	145	692	IPR010167	GO:0004042\|GO:0005737\|GO:0006526
	Bva08g00508	701	ProSiteProfiles	Gcn5-related N-acetyltransferase (GNAT) domain profile.	539	687	IPR000182	GO:0016407
	Bva08g00508	701	CDD	NAT_SF	582	642	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g00508	Bva-Chr8	2606629	2612636	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	GNAT	Bva08g00508		AA_kinase	1.2e-11	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g00508	K14682		-	gmx:100800925	900.968

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva08g00508	08	2606629	2612636	Bva11g01819	11	16007507	16015370	BWGD