Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00499 ATGCCGATGTTTCAGCCTTCCAAGAGAGGTGGGGTTGCTGGGTTAGAGGGTGGTGGTGACGGGCAGATTCTAGATCTGGATACCGCTGTCAAAGATGGGGTTTTAGGTGGTGTTGACGGTGGGGTTGTAGGAGCTGGGGTTGGTGAAAAATTGGATCTGGGGAAGATGATTGAAGAGCTGGACTTGTCCGAAGTGCCCTCTGTCTTCATTTGCCCAATCTCACTTGAACCAATGCTAGACCCGGTGACGCTTTGCACCGGCCAAACGTATGAGAGGTCCAACATTCTCAAATGGTTCAGTTTGGGCCACTTGACCTGCCCCACTACGATGCAAGAGCTCTGGGACGATTCCATTACTCCAAATACGACCCTTTACCGTCTAATTTACACATGGTTTTCTCAGAAGTATTTGCTCATGAAGAAGAGATCGGAAGACGTGCAGGGGAGGGCATCGGAACTTGTGGAGACACTGAAGAAGGTCAAGGGCCAAGCTCGAGTTCAAGCTCTCAAGGAACTCCATCAAGTTGTGGCTGCTCACGCCAATGCCAATAAGACTGTAATTGACGAAGTTGGAGTCTCTGTAATCTCATCTTTACTCGGCCCTTTTACTTCCCATGCTGTTGGTTCCGAGGTCATTGGCATTCTTGTAAGTTTGTCTCTTGATTCTGAATCAAAAAGGAATTTAATGCAACCTGCAAAGATTTCGTTAATGGTGGATATTTTGAACGAGGGTTCAATTGAGACGAAAATCAATTGTACCAGACTGATTGAATCCTTAATTGAAGAGAAGGATTTTAGGTCGGAGATTATCTCAAGCCATAGCCTTTTGGTTGGGTTGATGAGGCTGGTCAAGGATAAGAGACACACAAATGGAATCTTTCCTGGACTTAGCCTTCTTAGATCAATATGCTTGCATAAAGAAGTTAGGAATTTGCTTGTGAGCATTGGGGCTGTTTCTCAATTGGTTGAATTGTTGTCTGGTCTTGATCCTGATTATTTGGAATTAGCCCTTTCCGTCTTAGATGCATTAGCGTCTATACCTGATGGCAGAGTAGCTTTGAAGAATTGTTCTAACTCCATACCTGTTATGGTGAAACTGTTGATGAAGGTCTCTGAGAATTGCACCCAATATGCTTTGTCCATACTATGGTCTGTGTGCAAACTTGCGCCAGAGGAGTGTTCGTCGATTGCTGTGGATGCAGGACTCGCAGCAAAACTCCTCCTTGTGATTCAGAGTGGCTGTAATCCTATATTGAAACAACAGTCTGCTGAACTTTTGAAGCTGTGTAGTTTAAATTATTCGGATACCATCTTCATTTCCAAGTGCAAGCTTACTAGAACCATCCTATG 1349 0.447 MPMFQPSKRGGVAGLEGGGDGQILDLDTAVKDGVLGGVDGGVVGAGVGEKLDLGKMIEELDLSEVPSVFICPISLEPMLDPVTLCTGQTYERSNILKWFSLGHLTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVQALKELHQVVAAHANANKTVIDEVGVSVISSLLGPFTSHAVGSEVIGILVSLSLDSESKRNLMQPAKISLMVDILNEGSIETKINCTRLIESLIEEKDFRSEIISSHSLLVGLMRLVKDKRHTNGIFPGLSLLRSICLHKEVRNLLVSIGAVSQLVELLSGLDPDYLELALSVLDALASIPDGRVALKNCSNSIPVMVKLLMKVSENCTQYALSILWSVCKLAPEECSSIAVDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00499 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 138 IPR013083 -
Bva08g00499 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Bva08g00499 449 SUPERFAMILY RING/U-box 59 135 - -
Bva08g00499 449 PANTHER WDSAM1 PROTEIN 38 446 IPR045185 GO:0061630
Bva08g00499 449 Gene3D - 139 444 IPR011989 -
Bva08g00499 449 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 38 446 - -
Bva08g00499 449 CDD RING-Ubox_PUB 69 111 IPR045210 -
Bva08g00499 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Bva08g00499 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Bva08g00499 449 SUPERFAMILY ARM repeat 235 435 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00499 Bva-Chr8 2571320 2574055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00499 1 448 U-box Gene Family AT3G49810 75.446 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00499 - - gmx:100816457 775.393