Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00488 ATGAAGTCCATGGAAAATGATGATGCCAATAACAATCAGAATAACTGGTTAGGTTTTTCTCTCTCCCCACAAATGAACATGGATGTTTCTTCAGACCCTCATCAACACCATGATACACAACCATCTTCTGCTTCTGCTCAAGTATTTCCAGCAAGCTTGTACCACCCTCCAGCTCTTGCTAACTATGGCGTATACTATGGGCTTGAAGGTGAAAACGCTGGCTTGTATTCTCATCTTCCTGTAATGCCCCTCAAATCTGATGGGTCTCTCTATGTAATGGAAGCTTTGAGCAGGCCACAAGCACAAGCAATCGTAACAGCAACTCCAAAGCTGGAGAATTTCTTTGGTAACGCGACAATGGGAACCCCTCAGTATCAATGCAATGCAAGAGAAGCTATGGCACTGAGCTTAGACAGTATGATTTACAGCCATTCCCCAAGCCATGAGCCAAACACCCAAAATTGCACAAACCATATCCAAGGCACTTCCGGCCATCAAGAACAAACGCAAGGGATTCAGGTCCAACCGTTGTCATATTACACTGCGCTAAGAAATCATGATACGGTTATAGAAGGGTCCAGGCAAAATCAGATTCAGATTGCAGACTGTAATCTCCAGGCTACTAATATTGCTGAGGATGCAATTCCTGGCCTCAAGAACTGGGTCTTAAGGAACTACCCAGGTAACCATGCACAGGATTCAAAGATGGGTGGTCTTGCTGAGGACAAGGGAGGCGAATCTGGGTCCTTTAGTACAATGCCATATGGGGATTTGCAGTCTCTGAGCTTGTCCATGAGTCCTAGCTCCCAATCAAGCTGTGTTACAAGTTCACAGCGGACGTCACCTACTGTCATTGAGTCTCTTGTCATGGATACCAAGAAGAGGGGACCTGAAAGGATGAATCAGAAACAAATTGTTCACAGGAAATCCATAGATACATTTGGGCAGAGAACCTCTCAATATAGAGGTGTAACaagGCATAGATGGACTGGTAGATACGAAGCTCATCTGTGGGATAACAGCTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTTTATCTAGggGGTTATGATATGGAGGAGAAAGCTGCAAGAGCTTATGATCTGGCTGCACTCAAGTATTGGGGGCCTTCCACTCATATCAATTTCccaTtggaaaattatcaaaatgaacTTGAAGGAATGAAGAACATGACCAGACAGGAATATGTTGCTCACTTGCGAAGGAAAAGCAGTGGATTCTCACGAGGAGCTTCCATGTACAGAGGAGTAACGAGGCATCATCAACATGGACGCTGGCAAGCTCGAATTGGCAGGGTGGCTGGAAACAAAGATCTATATCTTGGAACGTTCAgtaCCCAAGAGGAAGCAGCAGAAGCATATGACATTGCTGCTATAAAATTCCGTGGCGTAAATGCTGTTACCAACTTTGACATAACAAGATATGATGTCGAAAAAATAATGGCAAGCAGTACCCTTCTTAGTGGGGAACTGGCTAAGCGGCATAGAGAGATTGATGGTCAAAACGAGGGTATTAACCATAACCATAATCCTTCTACATATGATGAGAGGCAAAAAGACATTGGCATTCTATCAAACAAGAGCTGCGAAACCCAATCAGAGTGGAAGATGGCTCTCTATCAGTCGTCTCAACAAGATGACCATGATCATAACCCAAGAAGAATTGAGACTTACAGAAGTCAACCCTTCTCAATGGGTTTGGATAATATGATTCAGGGACAAGTAGAGGACTCAACAAAAATGGGTTGTTCGCATGTGTCAAATCCTTCTTCCTTGGTAACAAGCTTGAACAACTCAAGAGAAGGTAGCCCAGATAAAACTAGCTTGCCAATGATCTCTGGAATTAGTGACGTCAACTCTAACTCTTGGGCCCCATCAGCCCACTTGAGGCCTGCACTTTCTTTGCCACAGATGCCAGTTTTTGCTGCTTGGACAGATTCATA 1970 0.4371 MKSMENDDANNNQNNWLGFSLSPQMNMDVSSDPHQHHDTQPSSASAQVFPASLYHPPALANYGVYYGLEGENAGLYSHLPVMPLKSDGSLYVMEALSRPQAQAIVTATPKLENFFGNATMGTPQYQCNAREAMALSLDSMIYSHSPSHEPNTQNCTNHIQGTSGHQEQTQGIQVQPLSYYTALRNHDTVIEGSRQNQIQIADCNLQATNIAEDAIPGLKNWVLRNYPGNHAQDSKMGGLAEDKGGESGSFSTMPYGDLQSLSLSMSPSSQSSCVTSSQRTSPTVIESLVMDTKKRGPERMNQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEGMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASSTLLSGELAKRHREIDGQNEGINHNHNPSTYDERQKDIGILSNKSCETQSEWKMALYQSSQQDDHDHNPRRIETYRSQPFSMGLDNMIQGQVEDSTKMGCSHVSNPSSLVTSLNNSREGSPDKTSLPMISGISDVNSNSWAPSAHLRPALSLPQMPVFAAWTDS 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00488 656 SUPERFAMILY DNA-binding domain 319 388 IPR016177 GO:0003677
Bva08g00488 656 Pfam AP2 domain 423 472 IPR001471 GO:0003700|GO:0006355
Bva08g00488 656 Pfam AP2 domain 320 378 IPR001471 GO:0003700|GO:0006355
Bva08g00488 656 CDD AP2 421 482 IPR001471 GO:0003700|GO:0006355
Bva08g00488 656 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 654 - -
Bva08g00488 656 PRINTS Ethylene responsive element binding protein signature 462 482 IPR001471 GO:0003700|GO:0006355
Bva08g00488 656 PRINTS Ethylene responsive element binding protein signature 321 332 IPR001471 GO:0003700|GO:0006355
Bva08g00488 656 CDD AP2 319 386 IPR001471 GO:0003700|GO:0006355
Bva08g00488 656 MobiDBLite consensus disorder prediction 589 618 - -
Bva08g00488 656 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 12 654 - -
Bva08g00488 656 ProSiteProfiles AP2/ERF domain profile. 320 386 IPR001471 GO:0003700|GO:0006355
Bva08g00488 656 Gene3D AP2/ERF domain 319 388 IPR036955 GO:0003700|GO:0006355
Bva08g00488 656 Gene3D AP2/ERF domain 422 482 IPR036955 GO:0003700|GO:0006355
Bva08g00488 656 SMART rav1_2 422 486 IPR001471 GO:0003700|GO:0006355
Bva08g00488 656 SMART rav1_2 320 392 IPR001471 GO:0003700|GO:0006355
Bva08g00488 656 ProSiteProfiles AP2/ERF domain profile. 422 480 IPR001471 GO:0003700|GO:0006355
Bva08g00488 656 SUPERFAMILY DNA-binding domain 421 481 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00488 Bva-Chr8 2527042 2531225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00488 248 503 AP2-EREBP Transcription Factor Family AT4G37750 75.000 4.37e-143 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Bva08g00488 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00488 K09285 - qsu:112030198 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00488 08 2527042 2531225 Bva11g01839 11 16089261 16092882 BWGD