Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00486 ATGGCCGAAACAAGTAAAACTACATCAAAAGAAACTGAATGCGAATAcgaagaagaggagaaaacTTTCGAAGATATTGGATTGGATGCTCGTCTTACTCGTGCTTTACTCAAAAAAGGAGTTGATAAACCGACTCCTATTCAGCGGGTCGGAATTCCATTGATATTGGAAGGTAAGGATGTAGTTGCTCGAGCAAAGACGGGTTCTGGGAAGACATTTGCATACCTTCTTCCATTGCTTCAGAAGTtgtttacaaaaaatattcaaagaaaGAAGCTTGCACCCAATGCGTTTATTCTCGTCCCAACTAGAGAATTGTGTCAGCAGGTTTATGCGGAGGTGTCGTCTCTCATTGAATTATGCAGAGTTCAATTGAAAGTTGTGCAGTTGACAAGCGATATGAGAGCTTCTGATTTGCGGGCAGCACTGGCAGGACCCCCTGATGTTTTAATTTCCACACCTGCCTGCATATCTAAGTGCTTGTCCAGTGGTGTACTTCAAGCGGCATCCATTAATGATTCGCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTGTTATCATATGGCTATGAGAAtgatataaaaacttttacgGCCCATGTACCTAGAAGTTGCCAATGTCTTCTTATGTCTGCAACCACAAGTCCTGATGTTGACAAACTAAAGAAGTTAATTTTACACAACCCGTTTATCTTGACTTTGCCTGAAGTAGGAAATCAGAAGGATGAGATCATCCCTAAAAATGTTCAGCAGTTCTGGATTTCATGCCCTCCTGGTGATAAGTTGCTTTACATCCTTTCTCTGTTGAAGTTGGAACTGGtccaaaaaaaagttttgatattCACTAATACCATAGATATGAGTTTCAGGATAAAACTATTTCTTGAAAAGtttGGGATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACTGAATTCGCGTCTTCATATTCTTGAGGAATTCAATGCTGGACTCTTCGATTATCTTATTGCAACTGATGACAGCCAGACAAAGGAGAATGAGGAAGCAAAGGAAAGTAATGGTGAATCAAGAAAGTCAAAAAAACGTCTTAAGCAAAAACTAGATTCTGAATTTGGAGTTGTTAGGGGAATCGACTTTAAAAATGTATCCACGGTTATAAACTTTGAAATGCCAAAAAGTGTTGCGGGATATGTACATCGAATTGGACGTACTGGCAGAGCATACAATTCTGGTTCTTCTGTTTCTTTGGTTTCTTCTGATGAGATGGAAATTTTAGAAGagataaaatcttttgttgGGGATGATGAAAACAAGGGCTCAAACTTAATTGCCGAGTTTCCCTTTCTAACCAAGAATGCAGTGGAATCTTTACGATATAGGGCTGAGGATGTTTCGAAGAGTGTAACAAAAATTGCTGTCCGAGAATCACGTGCACAGGATTTAGGAATGAAATTATG 1442 0.3752 MAETSKTTSKETECEYEEEEKTFEDIGLDARLTRALLKKGVDKPTPIQRVGIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTKNIQRKKLAPNAFILVPTRELCQQVYAEVSSLIELCRVQLKVVQLTSDMRASDLRAALAGPPDVLISTPACISKCLSSGVLQAASINDSLETLVLDEADLLLSYGYENDIKTFTAHVPRSCQCLLMSATTSPDVDKLKKLILHNPFILTLPEVGNQKDEIIPKNVQQFWISCPPGDKLLYILSLLKLELVQKKVLIFTNTIDMSFRIKLFLEKFGIKSAVLNAELPLNSRLHILEEFNAGLFDYLIATDDSQTKENEEAKESNGESRKSKKRLKQKLDSEFGVVRGIDFKNVSTVINFEMPKSVAGYVHRIGRTGRAYNSGSSVSLVSSDEMEILEEIKSFVGDDENKGSNLIAEFPFLTKNAVESLRYRAEDVSKSVTKIAVRESRAQDLGMKL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00486 480 PANTHER RNA HELICASE 5 422 - -
Bva08g00486 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 234 IPR027417 -
Bva08g00486 480 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 233 IPR014001 -
Bva08g00486 480 Gene3D - 1 235 IPR027417 -
Bva08g00486 480 SMART helicmild6 290 403 IPR001650 -
Bva08g00486 480 CDD SF2_C_DEAD 250 402 - -
Bva08g00486 480 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 5 422 - -
Bva08g00486 480 CDD DEADc_DDX56 28 235 - -
Bva08g00486 480 Pfam Helicase conserved C-terminal domain 261 403 IPR001650 -
Bva08g00486 480 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 21 49 IPR014014 GO:0003724
Bva08g00486 480 SMART ultradead3 40 253 IPR014001 -
Bva08g00486 480 Coils Coil 341 361 - -
Bva08g00486 480 Gene3D - 237 441 IPR027417 -
Bva08g00486 480 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 268 449 IPR001650 -
Bva08g00486 480 Pfam DEAD/DEAH box helicase 45 222 IPR011545 GO:0003676|GO:0005524
Bva08g00486 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 427 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00486 Bva-Chr8 2513934 2517921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00486 16 420 Eukaryotic Initiation Factors Gene Family AT3G13920 27.696 5.56e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00486 K14810 - gmx:100800749 740.725