Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00475 ATGGGTCCTGTCGATACTAGTAATTCAGGCCTCGAGCTTGTTCTAGGGTTAAGTTTAAGCAGTGCAGCACAAGAAACCAATACTCCTTCCAAGGCCGATACTATTCTTAGGTCAACCAAGCCTTGCTCCATTTTCAAGGAAACAAGCAATTCAGAGCCATCTTTGACGTTGGGCCTTTCCGGCGAGAGTTACCAGCTGCTCAGAAAGATTGCTGTGAATAAAGCTTGTGAGGTCGACCCTCTCGAACTGTCGCGCCAAACTTCACCTCATAGTGCTAGTGCTGTTTCGTCCTTCTCCAGTGGGAGGGTCAAGAGAGAGAGGGATCTCAGCAGCGAAGAGGTTGAGGCAGAGAGGGTTTCTTCCAGAGTGagtgatgaagatgaagatggcGCCACTAATGCCAGAAAGAAGCTCAGACTCACCAAGGAACAATCTGCCTTGCTCGAAGAAAGCTTCAAACAGCATAGCACCCTTAATCCGaagcagaagcaagCTTTGGCCAGGCAGTTAAAACTACTGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGGACAAAGCTGAAGCAAACAGAGGTTGACTGCGAGTTCTTAAAGAAATGCTGCGAAACACTGACGGATGAAAACAGAAGGCTACAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAACTGGGGCAGCCCTTGTACATGCCTATGCCGGCGGCAACACTTACCATGTGCCCTTCTTGCGAGAGGCTCAGCGGAGTCAGTGATGCCGCCTCCAATAAGAGCCCTTTCTCAATGGCTCCCAAGGCTCACTTCTTCAGCCCCTTCTCCAATCCTTCTGCAGCATGTTG 842 0.4834 MGPVDTSNSGLELVLGLSLSSAAQETNTPSKADTILRSTKPCSIFKETSNSEPSLTLGLSGESYQLLRKIAVNKACEVDPLELSRQTSPHSASAVSSFSSGRVKRERDLSSEEVEAERVSSRVSDEDEDGATNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLKLLPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLGQPLYMPMPAATLTMCPSCERLSGVSDAASNKSPFSMAPKAHFFSPFSNPSAAC 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00475 280 MobiDBLite consensus disorder prediction 84 100 - -
Bva08g00475 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 8 280 - -
Bva08g00475 280 SUPERFAMILY Homeodomain-like 127 192 IPR009057 -
Bva08g00475 280 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981|GO:0006355
Bva08g00475 280 Pfam Homeobox associated leucine zipper 191 225 IPR003106 GO:0006355|GO:0043565
Bva08g00475 280 Coils Coil 197 224 - -
Bva08g00475 280 MobiDBLite consensus disorder prediction 101 138 - -
Bva08g00475 280 SMART halz 191 234 IPR003106 GO:0006355|GO:0043565
Bva08g00475 280 Pfam Homeodomain 135 189 IPR001356 GO:0003677
Bva08g00475 280 Gene3D - 129 196 - -
Bva08g00475 280 MobiDBLite consensus disorder prediction 82 138 - -
Bva08g00475 280 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677
Bva08g00475 280 PANTHER - 8 280 - -
Bva08g00475 280 SMART HOX_1 133 195 IPR001356 GO:0003677
Bva08g00475 280 CDD homeodomain 135 192 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00475 Bva-Chr8 2445221 2446624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00475 1 280 Homeobox Transcription Factor Family AT4G37790 57.432 1.16e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva08g00475 Homeodomain 7.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00475 K09338 - jre:109019457 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00475 08 2445221 2446624 Bva11g01848 11 16154559 16156019 BWGD