Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00470 ATGCCGAACGCTGGTCAAAAGAAGATGATCCCAAGGGCAAATGCTAGAAATGAGGCATTCTCAAAACGCTGTTCAAGCATATTTTGGAAGGCAACTGAGCTTTCTGCCTTGTGTGCTGTCGAGATGGCTATTGTCATTTTCTCACCTGGTGGGAGAGCCTACTCCTTTGGCAGTCCCTGtgttgagaaaattattgatCGGTTTACCCACCCTGGGATTCCAGATGCTCCTGCTAATAATGAAGATGCTTCTGGCATGGCTGAACTTTACAAGGAGTACAATGATGTACTTGTTCAATGGGATGCTGAGAAGAAAAGGGGCAAGAAACTGAAGCGGAGGAATTTTCCAATTGATGACAAGGATAGGGATGATCTGGTTAATCTGAAGGCAAACTTGGAGATTCTCAGAAACGATATACAGAAGCAAATAGCAGCGCTTTTGTCTCAGAATCCTGTTCCAACATCATGCTATGCATCTGCTGGGGATGCTTCAACTTCAGCCAACCCTATCCTACCTGATTCTGGCTGTTG 530 0.4415 MPNAGQKKMIPRANARNEAFSKRCSSIFWKATELSALCAVEMAIVIFSPGGRAYSFGSPCVEKIIDRFTHPGIPDAPANNEDASGMAELYKEYNDVLVQWDAEKKRGKKLKRRNFPIDDKDRDDLVNLKANLEILRNDIQKQIAALLSQNPVPTSCYASAGDASTSANPILPDSGC 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00470 176 SUPERFAMILY SRF-like 8 73 IPR036879 GO:0003677|GO:0046983
Bva08g00470 176 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Bva08g00470 176 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 8 147 - -
Bva08g00470 176 PANTHER MADS BOX PROTEIN 8 147 - -
Bva08g00470 176 Coils Coil 125 149 - -
Bva08g00470 176 ProSiteProfiles MADS-box domain profile. 6 60 IPR002100 GO:0003677|GO:0046983
Bva08g00470 176 SMART madsneu2 4 59 IPR002100 GO:0003677|GO:0046983
Bva08g00470 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 56 IPR002100 GO:0003677|GO:0046983
Bva08g00470 176 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Bva08g00470 176 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Bva08g00470 176 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00470 Bva-Chr8 2412934 2415581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00470 8 146 Type I MADS-box Gene Family AT2G34440 30.719 8.49e-19 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva08g00470 SRF-TF 5.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00470 - - rcu:8275940 121.324