Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00462 ATGGAAATTTCATCTGCCAATGATAACTGCTTATTCCCCGATCACTTGGGAATGGAGGATAGCAATATTTTTGACGAGGAGTACTACCAGTACCAGTACCAGTTCCAGTCCGAAATGGACTCGTTGATGGGATTCCCGGTGGCTGTTGAAGAGGTTGAGCTGCAGCCATCTTTATCGGGATCGGGGGATAGCTATTcctcttataataataataacaacaatagCAATTGTCTCATCTCTAAGCGCAGCGTTGAAAGCCCTGAATCAGTAATTGGCCCAAGGCCAACAAAGCAGCTCAAGACCAGTAACTCGTCCAGCGTCACTCCCACTCACTTGATGCCTTCCACTTCTTCGTCCTCCCAAATTATCTCTTTCGACAACTCTTCGGTTGTTAACAACCTCCACTCCACTGTCTCCGACATTAAGCGCAAGCCTAAAATCGAGGCGAATGACATTTCCCACGACCTcgatttttcatctttctttacTGGTGACCACAGAACTATGTTTAAATATGACACGCCAACCACCAAATCTAAAACGCCTGCAGTCGCCAGAAATCCAGTCCAAGCTCAAGATCACGTCTTGGCCGAACgcaaaagaagggaaaaactCACCCAGAGATTCATAGCTCTCTCCGCCATTCTTCCCGGCCTCAAGAAGatggaCAAAGCTTCTGTCCTTGGAGCTGCTATCAAGCATGTGGAAAACCTTCGGGAACGAGTGAAGACGCTGGAGGAACAAGTAACTAAGAAAACAGTGGAATCTGCAGTTTTTGTGAACAGATCTGTTCTCTCTGCCGACGACATTGCTGCTACCTCTTCGTCCGATGGAAACTCCGACCAGCCATTCCCTGAAATTGAAGCAAGAGTTTCTGGTGAAGACGTGCTCATTATAATTCACTGTGACAAACACATAGCCTGTGTTCCTACAGTGCTCTGCGAATTACAGAAACTACATCTCGCCGTTCAAAGTAGCAGCTTTCTGCCATTTGGGACTACTACTCTTCACTTAACTGTTGTTGCACGGATGGGTAAAGAATACAGCATGACAACAAAGGAGCTTGTAAAAAGCCTGAGGAAGGCTTTGAGGCAGATTGTTGATGTGCTTTCGTTTTGCCTTTTTGTCCATCCTGGATTCCTGGAGCAATCGAAGCCCTGCGATGGAGTATCTGTTTCCTCTGCGTTGCGGTGTTTGAACCTGTA 1205 0.4448 MEISSANDNCLFPDHLGMEDSNIFDEEYYQYQYQFQSEMDSLMGFPVAVEEVELQPSLSGSGDSYSSYNNNNNNSNCLISKRSVESPESVIGPRPTKQLKTSNSSSVTPTHLMPSTSSSSQIISFDNSSVVNNLHSTVSDIKRKPKIEANDISHDLDFSSFFTGDHRTMFKYDTPTTKSKTPAVARNPVQAQDHVLAERKRREKLTQRFIALSAILPGLKKMDKASVLGAAIKHVENLRERVKTLEEQVTKKTVESAVFVNRSVLSADDIAATSSSDGNSDQPFPEIEARVSGEDVLIIIHCDKHIACVPTVLCELQKLHLAVQSSSFLPFGTTTLHLTVVARMGKEYSMTTKELVKSLRKALRQIVDVLSFCLFVHPGFLEQSKPCDGVSVSSALRCLNL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00462 401 PANTHER TRANSCRIPTION FACTOR BHLH18-LIKE 14 365 - -
Bva08g00462 401 SMART finulus 195 244 IPR011598 GO:0046983
Bva08g00462 401 MobiDBLite consensus disorder prediction 83 119 - -
Bva08g00462 401 Gene3D - 183 253 IPR036638 GO:0046983
Bva08g00462 401 PANTHER BHLH TRANSCRIPTION FACTOR 14 365 - -
Bva08g00462 401 MobiDBLite consensus disorder prediction 95 119 - -
Bva08g00462 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 254 IPR036638 GO:0046983
Bva08g00462 401 CDD bHLH_AtNAI1_like 191 263 - -
Bva08g00462 401 Pfam Helix-loop-helix DNA-binding domain 192 238 IPR011598 GO:0046983
Bva08g00462 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
Bva08g00462 401 Coils Coil 228 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00462 Bva-Chr8 2372219 2374097 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00462 86 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.216 1.29e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva08g00462 HLH 4.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00462 - - adu:107482661 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00462 08 2372219 2374097 Bva08g00462 08 2372219 2374097 ECH