Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00459 ATGGAACCATCATCAACCGACTGGTTATCTGATTTGGGAATGGATGATTACAATCTGTTTTCCCAATGGCACATGGATGATGAAAATCAGTTCCTTTCGCATGACATAGCCAGTGCACTGCAGGGACACAACTTGCAGCAAACTCCATCGTCTTGCGAGAGCTACACATATGGTACCTGCATTTCGGTGGCTGATGAAATTAGTAACTTTGAGAATCCTTCTACAGAGAAGGTCGAAACAAATAGCTTGAACTCGAGCATCGCTCAACAATTATCCCAGGAACCTTCCTCGTCGTACACTTCATCTCAACTTGTGTGTTTTGATAACGCAAATTCACCGCCTGCCCTTTCCAGCACCACCCAGTTTTATGGCTTTGACTGCTCCTTGAAGCCAACAAACAACAACGTGGTATCGTCTCAATTCGGAAACTTCAACACGCAATTCTCAGCTCTATCGTCAAAGGGTTCCTCGGAGAATCAAAATTGTGAACCAAACATCAGTCAAGGGACAAAGAGGTCCTTGTCAAGCACAAGAACTTCCGGTCACACTCAAGATCATATATTGGCTGAAAGGAAGCGGCGAGAAAAGCTGAGCCAGAGCTTCATTGTACTCGCAGGCCTGGTCCCTGGTCTGaaaaagATGGACAAGCTTTCTGTTCTTGGGGACGCTATCAAGCACGTGAAAGAGCTTCAGGAACGTTTAACATTGCTGGAGGGACAAACTAAGAAGAGGACAGAGGAGTCGGTTGCGTTTGTGAACAAATACCCTCTCTACTCCGGCGATGAGAACTTGGAGGGTGTCTCCGGCAAAGCCCTCCCCGAAGTGGAAGCCAGAGTATCAGAAAAGGACGTGCTGCTTCGAATCCActgccaaaaacaaaaaggactCGTAGTAAAGATTCTGGCAGAGCTTCAAAATCTTCGTCTATTTGCTGTCAATAGCAACGTATTGCCATTTGGGGATTCCACTCTTGACATCACCATTATAGCTCAGATGGACGAGGATTACAGCTTAACAAAGAAGGATCTCGTGAAAAACGTGCGAGTGGCCATATTGAAGTTTATGTG 1067 0.4499 MEPSSTDWLSDLGMDDYNLFSQWHMDDENQFLSHDIASALQGHNLQQTPSSCESYTYGTCISVADEISNFENPSTEKVETNSLNSSIAQQLSQEPSSSYTSSQLVCFDNANSPPALSSTTQFYGFDCSLKPTNNNVVSSQFGNFNTQFSALSSKGSSENQNCEPNISQGTKRSLSSTRTSGHTQDHILAERKRREKLSQSFIVLAGLVPGLKKMDKLSVLGDAIKHVKELQERLTLLEGQTKKRTEESVAFVNKYPLYSGDENLEGVSGKALPEVEARVSEKDVLLRIHCQKQKGLVVKILAELQNLRLFAVNSNVLPFGDSTLDITIIAQMDEDYSLTKKDLVKNVRVAILKFM 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00459 355 Pfam Helix-loop-helix DNA-binding domain 185 231 IPR011598 GO:0046983
Bva08g00459 355 Gene3D - 174 247 IPR036638 GO:0046983
Bva08g00459 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 246 IPR036638 GO:0046983
Bva08g00459 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 230 IPR011598 GO:0046983
Bva08g00459 355 MobiDBLite consensus disorder prediction 152 183 - -
Bva08g00459 355 PANTHER PROTEIN, PUTATIVE-RELATED 1 354 - -
Bva08g00459 355 MobiDBLite consensus disorder prediction 75 94 - -
Bva08g00459 355 SMART finulus 187 236 IPR011598 GO:0046983
Bva08g00459 355 PANTHER BHLH TRANSCRIPTION FACTOR 1 354 - -
Bva08g00459 355 Coils Coil 220 247 - -
Bva08g00459 355 MobiDBLite consensus disorder prediction 152 186 - -
Bva08g00459 355 CDD bHLH_AtNAI1_like 181 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00459 Bva-Chr8 2360369 2362211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00459 168 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 51.282 1.38e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva08g00459 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00459 - - gmx:100788128 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00459 08 2360369 2362211 Bva11g01859 11 16215911 16217918 BWGD
Bva08g00459 08 2360369 2362211 Bva08g00459 08 2360369 2362211 ECH