Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00453 ATGGCTGCAGAAATTGGCCTTCTCTCCATGACCCAGAtccaaaaattatcacaacCCCAACACcgtcaaaatcaaaatcaacctCAGCCAAACCCTAACTCTACTATCACCTCGCCGTGGATGTGGAACCCTATGGAAAACCAGGAAGATGATGACTCTTGGGAGGTCAGAGCTTTTGCAGAAGACACCAGAAACGTCATGGGTAGCACTTGGCCTCCCAGGTCTTACACCTGCACCTTCTGTAGAAGGGAATTTCGTTCTGCCCAAGCTCTAGGCGGCCACATGAACGTGCACCGCCGTGACCGCGCCCGGCTCCACCACCAAGCGCAACCGGGTTCAGTCAACGTCAACCCCAACTCATCTCCCACACCCTCATTCATAATCCCAGCTCAAGAGCTTGTTGCAAATGGTGGATTGTGCTTTCTCTACCATCTACCAAACCCTAATGGCACCTTTGCCACTACTACCAGCAATCTAAATGCATGTACTGAATCACCATCCACGCTCCTTTCCATTTCACCTTACCCACCAAACAACTTGATGCAAACTTGCTCTCCTTCCTTTGATTTTCCGGTGGCAAGGTCTTCAGGGATCACGTCTTCTCACTGTAATTCTAGCAAAGTCGAACAACATACAAGCTCCTCCAACAATAATGGCCACGAAGAGCTTGATCTAGAGCTCCGGCTGGGGAACAGACCAAAACCAACCTG 710 0.4803 MAAEIGLLSMTQIQKLSQPQHRQNQNQPQPNPNSTITSPWMWNPMENQEDDDSWEVRAFAEDTRNVMGSTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHQAQPGSVNVNPNSSPTPSFIIPAQELVANGGLCFLYHLPNPNGTFATTTSNLNACTESPSTLLSISPYPPNNLMQTCSPSFDFPVARSSGITSSHCNSSKVEQHTSSSNNNGHEELDLELRLGNRPKPT 236
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00453 236 SMART c2h2final6 76 98 IPR013087 -
Bva08g00453 236 MobiDBLite consensus disorder prediction 221 236 - -
Bva08g00453 236 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Bva08g00453 236 MobiDBLite consensus disorder prediction 199 220 - -
Bva08g00453 236 MobiDBLite consensus disorder prediction 199 236 - -
Bva08g00453 236 Gene3D Classic Zinc Finger 68 121 - -
Bva08g00453 236 SUPERFAMILY beta-beta-alpha zinc fingers 73 103 IPR036236 -
Bva08g00453 236 Pfam C2H2-type zinc finger 76 100 - -
Bva08g00453 236 PANTHER OS07G0101800 PROTEIN 41 230 - -
Bva08g00453 236 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 41 230 - -
Bva08g00453 236 MobiDBLite consensus disorder prediction 15 43 - -
Bva08g00453 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva08g00453 Bva-Chr8 2325025 2325735 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00453 40 233 C2H2 Transcription Factor Family AT4G17810 39.713 1.53e-38 130
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva08g00453 zf-C2H2_6 4.9e-06 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00453 - - jre:108984087 284.263
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00453 08 2325025 2325735 Bva11g01866 11 16242419 16243147 BWGD
Bva08g00453 08 2325025 2325735 Bva08g00453 08 2325025 2325735 ECH