Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00442 ATGCCAATCCCCTGGCGTCTCCTCGTTGTCCAAATTCTGATATACTACCTCCTCTCTTTCAGTTACTCTGAAGTCCGAACGCAAGTCACAAGAGACACTAACGGCGATAGCGTCGAGATGGGATGCACTGTAAGGGAAAAACATATCCGAGCGAATCGGAAACCGCGATCGGTGAAACCCGATAATGATTCTTGTTGTTATCTTGAGAAGGCTTCAATATCCAAATCTATGCTGGAATCGGGCCTCAAGCCTTTTAAATACCATCTGGGTTTCAACGATTCAGCTCAAAATCCAAACCTTAACTCCAATCCGAACCCTAATTCTGCTTCTAATGCTGAGGAAAGTGGGTGGGGATACTGTACCGAAGaacaattagaagaaattttattgaaaaatttggAATTCATATACAATGAAGCTGTGTCAAAGCTTGTTGCAATGGGATATGATGAGGACGTTGCTGTAAAAGCAATCTTGAGAAGTGGGCATTGCTATGGTGGAATGGACGtgttaacaaatatattgcAGAATTCATTATCTTATTTGAATGGTAACTGTGGTAGTAGCGCTAATAATGGCAATTTGGAGGAGTCCGAGCCTGTATTCTCAGACTTGAGGCAATTAGAGGAATACTCCCTGGCGGGCATGGTGTGTTTGTTGCAACAAGTAAGGCCCCACTTGAGTAAAGGCGATGCCATGTGGTGTTTGCTCATGAGCGATCTTCATGTAGGTAGGGCTACCTCTTTGGAAATTCCAGTGCTTCCTGCGCCAGTAAATGGTTGCCCTACCTCTAATACAGCGGAGACTGTTGGCAACCATTCAGTTGGTATTGTGACCCCGGCTCTATGTAGATTCCATGGCGGTTGGGGATTTGGAAATGGGGCAGGATCAGACTTTCCCGTCAGTGGGTTCTTTTCATATGGTGCGGAGATGACTTTACAAAGAGATATTGAATTGccaaagagatttagtctttCTCCTTCAATGAAGTCCTTGCTAAAAAGAAATGTTGCAATGTTTGCAGCTGGCTTTAGGGCAAACTCAAAACAATTGCCCACACAAGCTAAGACTACCAGCACTTTGTCAAGCTTTGATTCCCCACCTGTATCCAGAACAGAAGCTCCAGCTGAGCAGCCTGGGGATTCTCAGAATCCAAATAACCAAGATGTTGTGAACTCAGTGTTGAGTAAATTTCGTGAACTGAATCTTGATGAGAATTTGGAGTTTGTGGCAGAAGATCAAAAGGATGAGATGTTAATTGCTCTAATGCATCAGATTAAGGATCTTGAGAAGCAGGTAAAAGATCGAAAAGATTGGGCCCATCAAAAGGCAATGCAAGCTGCCAGAAAGCTAAGCGGTGATCTGACTGAGCTAAAACTGTTGAGGATGGAAAGAGAGGAGAACCAGAAagtgaagaaaggaaaacaggCACTCGAGGACACAACCATGAAGAGACTCTCGGAGATGGAGAATGCTTTGAGAAAGGCTAGTGGTCAAGTGGACCGGGCAAATGCAGCTGTGAGAAGACTTGAGACAGAAAATGCAGAAATTAAAGCAGAGATGGAGGCTTCTAAATTAAGTGCATCAGAGTCAGTCACGACTTGCTTGCAGGTCGCAAAGAGGGAGAAAAAGTGGTTGAAGAGGCTTCTAGCTTGGGAAAAGCAGAAAGCTAAAGAACAGCAGGAGATTTCagaggaaaaagagaagatattGAAGACACAAGAAGCATTGGTTCGGATTAAACAGAGTCATAAAGAGGCTGAGGCCAAGTGGAGGGAGCAGTTGAAGGCCAAAGAGGATGCTTCGGCACTGGTTGAGGAGGAACAGCGCTCTAAGGAAGCAGCTGAGGCTACTAATAAGAGGAAGCTTGAGGCTTTGCGCCTAAAGATCGAGATAGATTTCCAGCGCCACAAGGATGATCTGCTAAGACTGGAGCAAGAGCTCTCACGCCTTAAAGCATCGTATCAATCTGCTCAGTTGCGTCACCAATCAAATAGTCCACCTAAAAGCGAGTCTGAAGGTGCGAAGCCCCAAAGAGAGACAATTGCTAAGATGCTTCAAGAATTAGATAAACTGGAAGATTTCTCCGAGAAAGAAGTTCACTGTGATAGGGAATGCATTATATGCATGAACGATGAGGTCTCTGTTGTTTTCTTGCCATGTGCACATGAAGTTATGTGTGCTAGTTGCTGTGATGAATATGGGAAAAAGGGGAAAGCTGCTTGTCCTTGCTGCAGGGCTCCAATCGAGCAGAGGATCCGTGTATTTGGGGCGAGTTCTTA 2282 0.4316 MPIPWRLLVVQILIYYLLSFSYSEVRTQVTRDTNGDSVEMGCTVREKHIRANRKPRSVKPDNDSCCYLEKASISKSMLESGLKPFKYHLGFNDSAQNPNLNSNPNPNSASNAEESGWGYCTEEQLEEILLKNLEFIYNEAVSKLVAMGYDEDVAVKAILRSGHCYGGMDVLTNILQNSLSYLNGNCGSSANNGNLEESEPVFSDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRATSLEIPVLPAPVNGCPTSNTAETVGNHSVGIVTPALCRFHGGWGFGNGAGSDFPVSGFFSYGAEMTLQRDIELPKRFSLSPSMKSLLKRNVAMFAAGFRANSKQLPTQAKTTSTLSSFDSPPVSRTEAPAEQPGDSQNPNNQDVVNSVLSKFRELNLDENLEFVAEDQKDEMLIALMHQIKDLEKQVKDRKDWAHQKAMQAARKLSGDLTELKLLRMEREENQKVKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTTCLQVAKREKKWLKRLLAWEKQKAKEQQEISEEKEKILKTQEALVRIKQSHKEAEAKWREQLKAKEDASALVEEEQRSKEAAEATNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASYQSAQLRHQSNSPPKSESEGAKPQRETIAKMLQELDKLEDFSEKEVHCDRECIICMNDEVSVVFLPCAHEVMCASCCDEYGKKGKAACPCCRAPIEQRIRVFGASS 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00442 760 MobiDBLite consensus disorder prediction 349 387 - -
Bva08g00442 760 Coils Coil 486 527 - -
Bva08g00442 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 757 IPR013083 -
Bva08g00442 760 Pfam Family of unknown function (DUF6592) 132 249 IPR046527 -
Bva08g00442 760 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 40 759 - -
Bva08g00442 760 MobiDBLite consensus disorder prediction 349 369 - -
Bva08g00442 760 MobiDBLite consensus disorder prediction 655 678 - -
Bva08g00442 760 SMART ring_2 706 745 IPR001841 -
Bva08g00442 760 Coils Coil 461 481 - -
Bva08g00442 760 MobiDBLite consensus disorder prediction 655 672 - -
Bva08g00442 760 ProSiteProfiles Zinc finger RING-type profile. 706 746 IPR001841 -
Bva08g00442 760 PANTHER OS05G0141500 PROTEIN 40 759 IPR046934 -
Bva08g00442 760 Pfam Zinc finger, C3HC4 type (RING finger) 703 751 - -
Bva08g00442 760 Coils Coil 634 661 - -
Bva08g00442 760 Coils Coil 549 590 - -
Bva08g00442 760 Coils Coil 598 625 - -
Bva08g00442 760 SUPERFAMILY RING/U-box 696 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00442 Bva-Chr8 2270359 2274323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00442 706 756 C3H Transcription Factor Family AT1G73950 45.098 1.38e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00442 - - gmx:100777787 1058.9