Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00413 AtgtctctctctttttggtaTCCTCTCCTTCTTACCTCCCTTCTTTTCATGCAAACTCTGGCAGACACTTCATGCACcgattgtttaattaattctcgGGCATCATACTACCCAAATTCTGATGAACAAGGAACTAGTgTAGGCGCATGTGGCTTTGGTTCCTTTGGTGCTACATTGAATGGAGGAGACGTAACAGCTGCATCTGATCTTTATCGGAATGGTGTCGGTTGTGGTGCCTGTTACCAGGTGAAGTGTACCAACAGTGCCTATTGCTCAGACAAAGGTGTGACTGTAGTTATAACGGACCAAGGCTCAGGTCATAACACTGATTTCATTATGAGCAAACATGCCTTCACGGGGATGGCTCAGACCATTGATGCAGCTGCTAATCTATTAGCTCTTGGCGTAGTTGATGTTGAATACAGGCGTGTTTCATGCAGCTactcaaacaaaaacataacaattaaaatagatgaGAGCAGTGGCAACCCTCATTACTTGGCTTTTGTCATATGGAATCAACAAGGAAAGAGAGATATCACTGCTGTGCAGCTCTGTGAGACTCAGAACTTTGTGTGCAAGCTGCTGGATCGGGACCATGGTGCTGTCTGGGCCACTACCTCTCCACCAACTGGACCTTTGTCACTAAGAATGTTGTTCAGTGATGATGAGGGAGAAGACACGTGGGTTGTTCCCCCTAATAACATACCCCAAGACTGGAAAGCTGGAGATATATATGACTCAGGAATACAAGTGACCCAATA 764 0.4202 MSLSFWYPLLLTSLLFMQTLADTSCTDCLINSRASYYPNSDEQGTSVGACGFGSFGATLNGGDVTAASDLYRNGVGCGACYQVKCTNSAYCSDKGVTVVITDQGSGHNTDFIMSKHAFTGMAQTIDAAANLLALGVVDVEYRRVSCSYSNKNITIKIDESSGNPHYLAFVIWNQQGKRDITAVQLCETQNFVCKLLDRDHGAVWATTSPPTGPLSLRMLFSDDEGEDTWVVPPNNIPQDWKAGDIYDSGIQVTQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00413 254 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Bva08g00413 254 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Bva08g00413 254 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Bva08g00413 254 Pfam Expansin C-terminal domain 153 236 IPR007117 -
Bva08g00413 254 Pfam Lytic transglycolase 67 141 IPR009009 -
Bva08g00413 254 SUPERFAMILY Barwin-like endoglucanases 17 150 IPR036908 -
Bva08g00413 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Bva08g00413 254 PANTHER EXPANSIN-B3 9 252 - -
Bva08g00413 254 Gene3D - 18 147 IPR036908 -
Bva08g00413 254 Gene3D - 148 252 IPR036749 -
Bva08g00413 254 SUPERFAMILY PHL pollen allergen 151 248 IPR036749 -
Bva08g00413 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Bva08g00413 254 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 9 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00413 Bva-Chr8 2134160 2136029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00413 14 253 Expansin Gene Family AT4G17030 43.033 1.71e-60 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00413 - - gmx:100794009 422.165