Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00401 ATGGCTGTTCAAGCTCAATATCCATCCAATGTCCTACTTCTAAACAGCAAAAAGGGACAAGAAGGACATGACTATTCATTACAACCACAACCGGGAGGACTGCTTGATCAATCCCATATGTTATTCAACAATCGAGGTACTAATTCGCGCAAGAGAGCAAGGGAAGCTACAACTGCCATCGGAGCTTCCCAAACACATCCTGATGCTATTAATCCATTCTCTTTGCAATCCCAGCCTCCTCAGCTTATAGAACTCTCTCAGCTACACAACCAGCAACAAAATGTGGTCTCAACCGGTCTCCGTTTATCGTTTGGTGACCACCAGCAACAACGACTACAAttacagcagcagcagcaacaacaacaacatgGGTGTCACTCTGCTTTCTTATCTCTATTATCTGAAGGATTTGCCTCCCAAATTAAACAACAGAGAGACGAAATTGACCAATTCCTTCAAGCCCagGGAGACCAATTCCGGCGGGCATTAGCAGAGAAGAGGCATAAACATTACCGTGCGCTACTCAGCCTAGCGGAAGAATCATTGGCACGACGGTTGAGAGAGAAGGAGGTGGAAGTAGAAAAGGCTACGCGCAGGAACGCAGAGTTAGAGGCACGCGCAGCGCAACTTAACGTGGAAGCGCAGGTTTGGCAGGCGAAGGCTAAAGCACAGGAGGCAACAGCTGTATCATTGCAAGCGCAATTGCAGCAGGCTATTATGAACGGGACAGCAATGGGTGGCCAGGACAAAAGGGGTGGCGGTTGCGTCGCGGAGGATGGTGGACTATCATGTGCGTTGGGCGCAGAGGGACAAGCCGAGGATGCCGAGTCGGCTTATGTTGACCCGGACCGACTCGTGTTATCGGGACCGAAATGTCGAGGCTGCGGAAAGCGAGTTGCTTCCGTGGTGGTGCTGCCGTGTCGGCACCTATGCATCTGTACAGAATGTGACACACGATTCCGAGCATGCCCCGTCTGCCTCACCGTGAAAAACTCAACCGTTGAAGTCTATCTATCTTA 1019 0.4887 MAVQAQYPSNVLLLNSKKGQEGHDYSLQPQPGGLLDQSHMLFNNRGTNSRKRAREATTAIGASQTHPDAINPFSLQSQPPQLIELSQLHNQQQNVVSTGLRLSFGDHQQQRLQLQQQQQQQQHGCHSAFLSLLSEGFASQIKQQRDEIDQFLQAQGDQFRRALAEKRHKHYRALLSLAEESLARRLREKEVEVEKATRRNAELEARAAQLNVEAQVWQAKAKAQEATAVSLQAQLQQAIMNGTAMGGQDKRGGGCVAEDGGLSCALGAEGQAEDAESAYVDPDRLVLSGPKCRGCGKRVASVVVLPCRHLCICTECDTRFRACPVCLTVKNSTVEVYLS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00401 339 Pfam Zinc finger, C3HC4 type (RING finger) 291 328 - -
Bva08g00401 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 339 IPR013083 -
Bva08g00401 339 MobiDBLite consensus disorder prediction 58 75 - -
Bva08g00401 339 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 338 - -
Bva08g00401 339 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 338 IPR017066 -
Bva08g00401 339 MobiDBLite consensus disorder prediction 47 75 - -
Bva08g00401 339 ProSiteProfiles Zinc finger RING-type profile. 292 326 IPR001841 -
Bva08g00401 339 Coils Coil 179 241 - -
Bva08g00401 339 PIRSF SBP1_RNase_bind 1 339 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00401 Bva-Chr8 2017981 2020099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00401 292 328 Miscellaneous Gene Families AT2G21380 37.838 7.46e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00401 K19042 - gmx:100779548 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00401 08 2017981 2020099 Bva11g01909 11 16482930 16485155 BWGD