Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00377 ATGGCAAACCCATCTTCCTCAGCTTCTTCCTCCCAATTCACCTACTCGGACGGTTCATACTTCCCCATGCCTTTTCATCTTCAGCAACCTGCAACCACAGCGGCATCACAGTATGCGGCAGCACCATACGTCGGCGCCCCGTCGGCGCCTCGGGCTGGGCAAATCCCTCCTCACCCTGCTCCGGCCCCAGTTGGCGGCGCTTACTATCTTCCTCAGTATCAGCAGGCGCAACAGTTATTTCAAAGGGATGCACAGACGATCACGCGTGAAGCTCTGGAGAATGTGAAGGCAGCCATCGCTAACAGTGAGATCGAGCACAAAGCAGAGAGCAAAAAGAAAGCGATTCCTCGCAAAGCTGCTGGGCAATCATGGGAGGATCCTTCACTGGCAGAATGGCCAGAGAATGACCATAGGCTATTCTGCGGTGACCTTGGTAATGAGGTGAATGATGATGTTCTGTCAAAAGCTTTCGCAAGATTTCCTTCCTTTAACATGGCCAGAGTTGTCAGAGACAAGCGTTCCGGCAAAACAAAAGGCTATGGATTTGTTAGCTTTGCCGACACTTCTGACCTTGCCATAGCTCTTAAAGAGATGAATGGTAAATACGTAGGAAATCGCCCAATCAAACTGTGTAAGAGTAAGTGGAAGGAGAGGACAGATTATGATACTTtgggaaaacaaaagaaacaatctCGGAAGAAACTGAAAACCTCAAGGGCGAGCATATTGCATTCCTG 737 0.4844 MANPSSSASSSQFTYSDGSYFPMPFHLQQPATTAASQYAAAPYVGAPSAPRAGQIPPHPAPAPVGGAYYLPQYQQAQQLFQRDAQTITREALENVKAAIANSEIEHKAESKKKAIPRKAAGQSWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFARFPSFNMARVVRDKRSGKTKGYGFVSFADTSDLAIALKEMNGKYVGNRPIKLCKSKWKERTDYDTLGKQKKQSRKKLKTSRASILHS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00377 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 209 IPR000504 GO:0003723
Bva08g00377 245 PANTHER RNA-BINDING PROTEIN 42-LIKE 37 244 - -
Bva08g00377 245 MobiDBLite consensus disorder prediction 106 128 - -
Bva08g00377 245 MobiDBLite consensus disorder prediction 229 245 - -
Bva08g00377 245 Gene3D - 72 211 IPR012677 -
Bva08g00377 245 MobiDBLite consensus disorder prediction 223 245 - -
Bva08g00377 245 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 37 244 - -
Bva08g00377 245 Coils Coil 92 112 - -
Bva08g00377 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Bva08g00377 245 SUPERFAMILY RNA-binding domain, RBD 121 219 IPR035979 GO:0003676
Bva08g00377 245 SMART rrm1_1 138 211 IPR000504 GO:0003723
Bva08g00377 245 CDD RRM_RBM42 131 213 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00377 Bva-Chr8 1866472 1867794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00377 139 239 Eukaryotic Initiation Factors Gene Family AT2G23350 30.693 4.89e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00377 K25079 - csv:101207945 328.561