Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00371 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACGCCACTTTGGCGCAATGGGCCACCAGAGAAGCCAGTACTTTGCAATGCATGTGGATCTCGGTGGAGGACAAAGGGAACACTTGCAAATTACACCCCTTTACATGCTCGGGCAGAAACTGATGATTACGAGGATCAAAGGGTTTCTAGGGGGAAGAGCATATCATTAAATAAGAACAAAGAAGTCAAATTGCTCAAACGAAAGCAGAATTACGATAATGTAGCTTATGGAGGGTTTACCCCTGATTACAACCAGGGATTCCGAAAAGTTATAGATGAAGATGTGAGCAATAGATCAAGTTCTGGATCAGCCGTCTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGAACAGATGCTAGTGACTTGACAGGTGCTGCTCAATCAGTTGTCTGGGATACTATGGTGCCTTCAAAAAAGAGGACATGTGTGACTCGTCCAAAGCCATCTTCTGTTGAGAAGCTCACAAAAGATTTATATACTATCCTTCATGAACAACAGTCCTATTTATCTGCCTCTTCTGAAGAGGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACACGGAAGTGTTCTCATTAGGCACCCTAGCTCTATAGCTCGTGAAGAAGAGTCTGAGGCTAGTTCTCTCTCTGTTGATAACAAACAATGCCCAACAAGTGAGGCGTATTCCTGTTCTGGTGCCATTCCCTTGCATAATAATTGGAATGTTATGAACTTCTCAGCTCAAAGATTTGAAAAGATGAGGAATTCTGTTGATCAAGGAATGCCGCAGGAGCAACTTAAAAGGGACAAATCTCAGCATGAAAGAGTACATGTGCTGGGAAATCACAACTCACCACTGTGCTTAATAGATTTGAACGATGTCATAAACTATGAGGAGTTTATGAGACAATTGACAAATGAAGAGCAGCAACAACTACTGAAGTGTCTACCTCTGGTTGATACGGCTAAACTTCCGGACAGCATCAAGAGCATGTTCAATAGCTCCCAATTCAAGGAGAACATAACTTACTTTCAGCAACTTCTTACGGAAGGTGTCTTTGATATCTCCTTACTGGGGGCAAAACCTGAAGACTGTAAGACATTAAAAAGGCTTGCTTTATCCAATCTTTCAAAGTCAAAATGGGTGGAACACTATAATTTACTCAAGAGATGTAAAAACCGAAACGGAAAGTCTGTTGCTCCGGGATCCACTGGCACTGTATCAAGTAATGTTGCAAACGTCAAGAGGTTGCGTGACagccaaaatcaaaattttccagAAACAAAGACAACAATGAGAAGCCCGAAAAGGGTGGTGATGAAGGGTGGGTATGAGGTCAAGGAAGTTATGGAAGACGGGTCTAGCGTCAGTCCAAAGAGCTTGTTTGCTTTACCCCCTGATGGTAGCTCGCTGATGCTGGATTCTTTCAACTTTGTTGAGGAGAGTTCTGATCAGGATCTGCTGTTGGAGGTGCCATCCAACAGTTCTTTTCCACAGGCAGAGCTGCTGCAGCCAACATTAAGCATTGGTGGTCAAGCCAGCACCAGCAGTAGCTCAATACACCCACGTCTTATCCATCCCTG 1622 0.4322 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDYEDQRVSRGKSISLNKNKEVKLLKRKQNYDNVAYGGFTPDYNQGFRKVIDEDVSNRSSSGSAVSNSESCAQFGGTDASDLTGAAQSVVWDTMVPSKKRTCVTRPKPSSVEKLTKDLYTILHEQQSYLSASSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKQCPTSEAYSCSGAIPLHNNWNVMNFSAQRFEKMRNSVDQGMPQEQLKRDKSQHERVHVLGNHNSPLCLIDLNDVINYEEFMRQLTNEEQQQLLKCLPLVDTAKLPDSIKSMFNSSQFKENITYFQQLLTEGVFDISLLGAKPEDCKTLKRLALSNLSKSKWVEHYNLLKRCKNRNGKSVAPGSTGTVSSNVANVKRLRDSQNQNFPETKTTMRSPKRVVMKGGYEVKEVMEDGSSVSPKSLFALPPDGSSLMLDSFNFVEESSDQDLLLEVPSNSSFPQAELLQPTLSIGGQASTSSSSIHPRLIHP 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00371 540 Gene3D - 293 392 IPR038108 -
Bva08g00371 540 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Bva08g00371 540 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Bva08g00371 540 Pfam Asx homology domain 280 367 IPR028020 -
Bva08g00371 540 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Bva08g00371 540 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Bva08g00371 540 PANTHER OSJNBB0038F03.10 PROTEIN 1 540 IPR044589 -
Bva08g00371 540 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Bva08g00371 540 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 540 - -
Bva08g00371 540 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Bva08g00371 540 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Bva08g00371 540 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00371 Bva-Chr8 1833943 1840117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00371 1 517 C2C2-Gata Transcription Factor Family AT4G17570 55.472 3.70e-167 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva08g00371 ASXH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00371 - - gmx:100798504 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00371 08 1833943 1840117 Bva11g01927 11 16578536 16584917 BWGD