Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00348 ATGATGGTTCAGAAAGAAGATTTGGGCTTGAGTCTCAGTTTGAGTTTCCCTCAGAATCCTCTGCACCTCAATCTCGTTTCTTCTTCCACTTACTCTTCGTCCTCTCCTTCTGCTTCCAACCTTCAGAAAACCTCTTGGAACGAGCCTTTAACTTCCTCGGATCGAAATTCTGAAACATGCAGAGCCGAAGGTCGATCTTTCCTCCGAGGAATCGACGTGAATCGATTGCCTTCGGCGGTTGATTGCGAAGAGGAGGCAGGGGTTTCATCTCCAAACAGCACGATTTCGACTGTGAGCGGCAAGCGAAGTGAGAGGGAACCAAACGGAGAAGAGCATGAGAATGAGATGGACAGAGCCTGTTCTCGAGGAATCAGCGACGAAGAAGACGCCGAAACCTCGAGAAAAAAGCTTAGGCTCTCTAAAGATCAATCTGCTATCCTCGAGGAGAGTTTCAAAGAGCACAACACGCTGAATCCGCAGAAGCAGAAGTTGGCGTTGGCAAAGCAACTGGGCCTTCGACCAAGACAAGTAGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACTAAGCTGAAGCAAACTGAGGTAGACTGTGAGTTCTTGAAAAGGTGCTGCGAGAATTTGACGGAGGAGAACAGACGGTTGCAGAAGGAAGTTCAGGAGCTGAGAGCACTCAAACTTTCCCCACAATTCTACATGCAAATGACCCCACCTACCACCCTCACTATGTGCCCTTCATGTGAGCGCGTAGCTGTTCCGCCCTCTGCGGTGGAAGCTGGCCGCCACCATCCCATGGCCCCGGCTCACCCTCGGCCTATTCCCATCGGCCCGTGGGCCACGGCAGCTCCCATTCCACACAGACCCTTTGATGCACTCCGTCATAGATCCTG 887 0.5186 MMVQKEDLGLSLSLSFPQNPLHLNLVSSSTYSSSSPSASNLQKTSWNEPLTSSDRNSETCRAEGRSFLRGIDVNRLPSAVDCEEEAGVSSPNSTISTVSGKRSEREPNGEEHENEMDRACSRGISDEEDAETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPPSAVEAGRHHPMAPAHPRPIPIGPWATAAPIPHRPFDALRHRS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00348 294 Pfam HD-ZIP protein N terminus 2 106 IPR006712 GO:0005634
Bva08g00348 294 MobiDBLite consensus disorder prediction 27 57 - -
Bva08g00348 294 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 285 - -
Bva08g00348 294 Coils Coil 189 226 - -
Bva08g00348 294 CDD homeodomain 134 191 IPR001356 GO:0003677
Bva08g00348 294 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
Bva08g00348 294 MobiDBLite consensus disorder prediction 27 58 - -
Bva08g00348 294 PRINTS Lambda-repressor HTH signature 161 170 IPR000047 GO:0003677
Bva08g00348 294 PRINTS Lambda-repressor HTH signature 170 186 IPR000047 GO:0003677
Bva08g00348 294 MobiDBLite consensus disorder prediction 82 137 - -
Bva08g00348 294 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Bva08g00348 294 Gene3D - 138 188 - -
Bva08g00348 294 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Bva08g00348 294 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Bva08g00348 294 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Bva08g00348 294 MobiDBLite consensus disorder prediction 103 137 - -
Bva08g00348 294 SUPERFAMILY Homeodomain-like 126 191 IPR009057 -
Bva08g00348 294 MobiDBLite consensus disorder prediction 87 102 - -
Bva08g00348 294 SMART HOX_1 132 194 IPR001356 GO:0003677
Bva08g00348 294 PANTHER - 4 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00348 Bva-Chr8 1727275 1729316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00348 1 294 Homeobox Transcription Factor Family AT4G16780 64.527 3.97e-117 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva08g00348 HD-ZIP_N 5.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00348 K09338 - vvi:100246436 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00348 08 1727275 1729316 Bva11g01948 11 16692492 16694520 BWGD