Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00344 ATGACTCGGCGATGCTCGCATTGCAGCCACAATGGACACAACTCCAGGACCTGCCCCAACCGTGGAGTCAAGCTATTTGGGGTCCGATTGACAGATGGGTCGATCCGAAAGAGTGCTAGTATGGGCAATCTCAGCCACTATGCCGGGTCAAGTTCCGGAACTCATCATGCCGGGTCTAACAATCCGGGTTCTCCCGGGGATACCCCTGATCACGGTGCCGCCGCTGACGGCTACGCTTCGGAGGATTTTGTTCCTGGCTCATCATCCAGTTCCcgtgaaagaaagaaggGTGTTCCATGGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTTGGCAAAGGAGATTGGCGTGGAATTGCACGAAATTATGTTATATCAAGGACGCCTACTCAAGTAGCCAGCCATGCTCAGAAATACTTCATCAGGCAGAGCAATGTGTCCAGGCGAAAAAGACGTTCCAGCTTGTTTGATATCGTTGCAGATGAATCGGCTGACACACCAATGGTACCAGAAGACTTCTTGACAGCTAATGAACCAAAGGCTGAAACAGACGGAAATGACCCCTTGCCTGGCCCTCCAGCTATTGAGGAAGAGTGTGAATCCATGGATTCAACCAACTCAAATGAAGGAGAGTCTGCCTCGTTAAAGCCAGATAGCTCACAATCTGCGTATCCCATGCTATATCCTACATATGTCTCGCCTTTCTTCCCATTTCCTCTGCCCTATTGGTCAGGATACAGTCCGGAGACCACTAAAAAGGAGACACACGAAGTGCTGAAGCCAACTGCAGTACATTCTAAAAGCCCAATAAATGTCGATGAGCTAGTTGGCATGTCAAAACTGAGCTTAGGAGACTCTATTGGTGACTCTGGCCCTTCTTCTCTGTCGCTAAAGCTTCTTGAAGGACCCTCTAGACAGTCGGCTTTTCATGCAACTCCAGCATGTGGTAGTTCAAATATAAATGACAGTGCGATCCATGCAGTTTA 998 0.48 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAGSSSGTHHAGSNNPGSPGDTPDHGAAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADESADTPMVPEDFLTANEPKAETDGNDPLPGPPAIEEECESMDSTNSNEGESASLKPDSSQSAYPMLYPTYVSPFFPFPLPYWSGYSPETTKKETHEVLKPTAVHSKSPINVDELVGMSKLSLGDSIGDSGPSSLSLKLLEGPSRQSAFHATPACGSSNINDSAIHAV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00344 332 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Bva08g00344 332 MobiDBLite consensus disorder prediction 181 224 - -
Bva08g00344 332 SMART sant 96 146 IPR001005 -
Bva08g00344 332 CDD SANT 99 144 IPR001005 -
Bva08g00344 332 Gene3D - 98 150 - -
Bva08g00344 332 PANTHER TRANSCRIPTION FACTOR KUA1 1 323 - -
Bva08g00344 332 MobiDBLite consensus disorder prediction 209 224 - -
Bva08g00344 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Bva08g00344 332 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Bva08g00344 332 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
Bva08g00344 332 MobiDBLite consensus disorder prediction 1 21 - -
Bva08g00344 332 MobiDBLite consensus disorder prediction 41 66 - -
Bva08g00344 332 PANTHER BNAC01G21010D PROTEIN 1 323 - -
Bva08g00344 332 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
Bva08g00344 332 MobiDBLite consensus disorder prediction 41 101 - -
Bva08g00344 332 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00344 Bva-Chr8 1700106 1703176 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva08g00344 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00344 - - ccaj:109807943 575.089