Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00342 ATGGAAGAAGAAGCTGTCCTAATAGACAATGAAGCTCGACCAACCACTTCCTTTTCCTCAACCTCAACCaattcttcctcttcctccgTAGAAGCCAACTTTAACGCAGTGATGAGAAATCAAGGTTGCAgcgaaaataagaaaaatagaaaaagagacaTTGATGGGAAGCACCCAACGTATCATGGAGTACGCATGCGGCAATGGGGCAAATGGGTATCAGAAATCAGAGAGCCGAGgaagaaatcaagaatttGGCTTGGAACTTTCCCCACGGCAGAGATGGCGGCTCGAGCTCATGACGTAGCGGCTCTTACAATCAAAGGTAGCTCGGCTATCCTCAATTTCCCCGAACTGGCTCGAGACCTTCCGCGTCCCGCCAGCACTTCTCCTAAGGACATTCAAGCCGCCGCTGCAAAAGCAGCCGCTATAGATTACGAAGGAAGCCACAAAGCAGAAGTGGAGCTAAGCCAAAGCATATCAATATCATCCTCCCATGACACTGGGGAATCATCAAATTCACCGTTGACAGATGAAGATGATACATTTGACCTCCCTGATCTTTCACCCGACTTAAATCATAGAATGTTCCACTTCTCGTCTCCGTGGCTAGTGCCTGGAACTGAACTTCTAGACTCAGCTTCACGGTTGGAGGACCCTGTTCCTTTTCTCTGGGACTCTTACTA 686 0.4461 MEEEAVLIDNEARPTTSFSSTSTNSSSSSVEANFNAVMRNQGCSENKKNRKRDIDGKHPTYHGVRMRQWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALTIKGSSAILNFPELARDLPRPASTSPKDIQAAAAKAAAIDYEGSHKAEVELSQSISISSSHDTGESSNSPLTDEDDTFDLPDLSPDLNHRMFHFSSPWLVPGTELLDSASRLEDPVPFLWDSY 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00342 228 MobiDBLite consensus disorder prediction 12 43 - -
Bva08g00342 228 MobiDBLite consensus disorder prediction 162 179 - -
Bva08g00342 228 Pfam AP2 domain 60 109 IPR001471 GO:0003700|GO:0006355
Bva08g00342 228 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Bva08g00342 228 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Bva08g00342 228 MobiDBLite consensus disorder prediction 162 187 - -
Bva08g00342 228 Gene3D AP2/ERF domain 60 118 IPR036955 GO:0003700|GO:0006355
Bva08g00342 228 CDD AP2 61 119 IPR001471 GO:0003700|GO:0006355
Bva08g00342 228 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Bva08g00342 228 MobiDBLite consensus disorder prediction 44 61 - -
Bva08g00342 228 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Bva08g00342 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 20 196 - -
Bva08g00342 228 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
Bva08g00342 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 196 - -
Bva08g00342 228 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00342 Bva-Chr8 1692644 1693524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00342 48 220 AP2-EREBP Transcription Factor Family AT2G44940 49.758 5.38e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva08g00342 AP2 5.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00342 - - gmx:100812293 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00342 08 1692644 1693524 Bva11g01954 11 16735634 16736529 BWGD