Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00324 ATGGAGAAGCACAAATGCAAGCTTTGCTCTAGGACATTCGCCAATGGCAGAGCATTAGGTGGACACATGAAGGCTCACTTGGCCACCCTTCCCCTTCCTCCAAAGCCCGAACCACTCGGTGACTCGGCTTTATTGTCGTATTCTTCTtccgaagaagaagaagaagaagaagcactTGGATACGGAGAGCCAGAGCAAAAGGGGTTGATTTATGAGTTGAGGGAGAATCCCAAGAAAAGTTTCAGACTTGCAGATCCTGAGTTTTCTTTTGCCATTGATAATGGGGCTGTCGTCCTAGATAGAGAGAGCGAGACTGAGTCAAAGAACCCAACTCGGCGGCGATCCAAGAGAAACCGGAAATCCAGCATCGCGGGGAGCCCAACCCAGAATCAGGATGAGAAATTGGAACTGAAGAGGCCTAAGCCGTGTTTTCCAGAGTCACCGCTCGAGCCTGAACCTGCGAGCTCAGTTTCTGATACTTCCCCCGAAGAAGATGTTGCTATGTGCCTCGTGATGCTCTCAAGGGACAGATGGGTGAGAAATATTGTAAAAGAAGATCAAGACGAGGAAGTACAAGAGCTGAGATCGGTAGAGGAATCAAGGGGATTAGAAAAGATCAAGTTGAAGAGAGTTCGCGGGAAGCACCAGTGTGACAACTGTAGAAAAACGTTTCGATCTTCTCGCGCATTAGACAGTCACAAAAACATCTGCTTTCTTGACGAAACGCAAGTTCAGAATGCAggtaatgataaaatttttgaatgccCGTATTGTCGTAAGATATTTGGGTCAGGACAAGCACTCGGTGGTCACAAGAGATCTCATCTCTTggcatcttcatcatcaactGTTACAGATTCCGGTAGATTAAAAGAGGCCATAATAGATCTCAACTTGCCTGCTCCAGCAGAAGAAGATGAACTCAGTGTGCTTTCTGAtgcata 944 0.4343 MEKHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPEPLGDSALLSYSSSEEEEEEEALGYGEPEQKGLIYELRENPKKSFRLADPEFSFAIDNGAVVLDRESETESKNPTRRRSKRNRKSSIAGSPTQNQDEKLELKRPKPCFPESPLEPEPASSVSDTSPEEDVAMCLVMLSRDRWVRNIVKEDQDEEVQELRSVEESRGLEKIKLKRVRGKHQCDNCRKTFRSSRALDSHKNICFLDETQVQNAGNDKIFECPYCRKIFGSGQALGGHKRSHLLASSSSTVTDSGRLKEAIIDLNLPAPAEEDELSVLSDA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00324 314 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Bva08g00324 314 MobiDBLite consensus disorder prediction 100 163 - -
Bva08g00324 314 Gene3D Classic Zinc Finger 212 275 - -
Bva08g00324 314 SMART c2h2final6 215 235 IPR013087 -
Bva08g00324 314 SMART c2h2final6 253 275 IPR013087 -
Bva08g00324 314 SMART c2h2final6 4 26 IPR013087 -
Bva08g00324 314 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Bva08g00324 314 ProSitePatterns Zinc finger C2H2 type domain signature. 255 275 IPR013087 -
Bva08g00324 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 275 IPR013087 -
Bva08g00324 314 MobiDBLite consensus disorder prediction 32 68 - -
Bva08g00324 314 SUPERFAMILY beta-beta-alpha zinc fingers 215 275 IPR036236 -
Bva08g00324 314 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 314 IPR044303 GO:0006355
Bva08g00324 314 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 314 - -
Bva08g00324 314 Pfam C2H2-type zinc finger 4 28 - -
Bva08g00324 314 Pfam C2H2-type zinc finger 253 275 - -
Bva08g00324 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00324 Bva-Chr8 1588328 1589492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00324 1 311 C2H2 Transcription Factor Family AT3G60580 37.313 6.38e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva08g00324 zf-C2H2_6 1.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00324 - - qsu:112028002 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00324 08 1588328 1589492 Bva11g01975 11 16844626 16845834 BWGD