Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00287 ATGGCCGACGAAGCCAAAGCCAAAGGTAATGCTGCTTTTTCGTCCGGCGATTTCGCTGCTGCCATCCGTCACTTTTCCGACGCCATCACTCTGTCTCCCGACAATCATGTACTCTATTCAAATCGATCTGCAGCCTACGCTTCTCTTCAGAAATACGCTGAAGCTTTAACCGACGCCAAGAAAACCGTGGAGTTGAAGCCCGATTGGTCCAAGGGTTACAGCCGTCTGGGTGCTGCACATCTTGGTCTGGGCCAGCACGATGATGCTATTGCTGCTTACACGAAAGGGCTTGAGATCGACCCTAATAATGAAGCACTAAAATCCGGCTTAGCTGACGCTCAGTCGGCAGCTTCTAGGCACCGTGCGCCGCCGCCGACGAATAATCCTTTTGGAGATGCTTTTTCTGGGCCCGAGATGTGGGCAAAGCTCACTGCTGACCCGACGACGAGAGTGTTCCTTCAACAACCAGATTTCGTGAATATGATGCAAGATATTCAGAAAAATCCTAACAATCTAAATTTGTACTTGAAGGATCAAAGAGTCATGCAAGCCCTTGGGGTTTTACTGAACATTAGGATGCGGGCACCAACCGAGGACACTGATATGCCGGAGTCCTCTCCTTCGCCTCCACCACAGGAGCGGAAGAGACCAGCTGAAACTGAGCCTGCAAAGGAAGAGAAGCATCCCGAGCCCGAGCCTGAGTCTATGGAATCGGCAGAGGATAGGGAAGCAAAGGAGAGGAAGGCTGACgctcaaaaggaaaaggaggcAGGAAATGCAGCCTACAAGAAGAAGGATTTTGAAACAGCAATTCAGCATTACACGAAGGCTTTGGAGTTGGATGATGAGGATATATCATATCTCACAAACCGCGCTGCTGTTTATTTGGAGATGGGAAAGTATGAGGAATGTATAAAGGATTGCGATCAGGCTGttgaaagaggaagagagCTGAGATCCGACTTTAAGATGATTGCTAGAGCTCTAACGAGGAAGGGGACAGCACTGGTCAAAATGGCAAAATGCTCCAAGGACTTTGAACCTGCTATTGAGACTTTCCAAAAAGCTCTTACAGAGCATCGGAACCCAGACACCCTGAAGAAATTGAACGATGCTGAGAAAGCTAAGAAAGAACTAGAACAACAAGAATATTTTGATCCAAAATTGGCTGATGAGGAGCGAGAGAAAGGTAATGAATTCTTCAAGCAGCAAAAATATCCTGAGGCCGTAACGCATTATACGGAGGCAATTAGAAGGAACCCTGAAGATCCTAAGGCATACAGTAACAGGGCTGCTTGCTACACAAAATTGGGGGCATTGCCTGAGGGATTGAAAGATGCGGATAGGTGCATTGAGCTTGATCCAACGTTCTCCAAGGGTTATACTAGAAAAGGTGCAGTCCAGTTTTTCATGAAAGAATATGATAAAGCTTTGGAAACGTATCAGGAAGGGTTGAAACATGACCCAAACAACCAGGAGTTGCTTGATGGCATAAGAAGATGTGTAGAACAAATCAATAAGGCCAGTCGTGGAGATTTAAGTCCTGATGAGTTGAAGGAGAGACAGGCCAAGGCGATGCAGGATCCAGAGATTCAGAACATTCTCCAAGACCCTGTAATGAGACAGGTATTGACTGACTTCCAGGAGAATCCCAAGGCTGCACAGGAACACACAAAGAATCCTATGGTGATGAACAAGATCCAAAAGCTGATCAGTGCTGGAATTGTCCAGACGAAGTA 1739 0.4595 MADEAKAKGNAAFSSGDFAAAIRHFSDAITLSPDNHVLYSNRSAAYASLQKYAEALTDAKKTVELKPDWSKGYSRLGAAHLGLGQHDDAIAAYTKGLEIDPNNEALKSGLADAQSAASRHRAPPPTNNPFGDAFSGPEMWAKLTADPTTRVFLQQPDFVNMMQDIQKNPNNLNLYLKDQRVMQALGVLLNIRMRAPTEDTDMPESSPSPPPQERKRPAETEPAKEEKHPEPEPESMESAEDREAKERKADAQKEKEAGNAAYKKKDFETAIQHYTKALELDDEDISYLTNRAAVYLEMGKYEECIKDCDQAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDFEPAIETFQKALTEHRNPDTLKKLNDAEKAKKELEQQEYFDPKLADEEREKGNEFFKQQKYPEAVTHYTEAIRRNPEDPKAYSNRAACYTKLGALPEGLKDADRCIELDPTFSKGYTRKGAVQFFMKEYDKALETYQEGLKHDPNNQELLDGIRRCVEQINKASRGDLSPDELKERQAKAMQDPEIQNILQDPVMRQVLTDFQENPKAAQEHTKNPMVMNKIQKLISAGIVQTK 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00287 579 ProSiteProfiles TPR repeat profile. 458 491 IPR019734 GO:0005515
Bva08g00287 579 SMART CBM 528 567 IPR006636 -
Bva08g00287 579 SMART CBM 136 175 IPR006636 -
Bva08g00287 579 MobiDBLite consensus disorder prediction 214 260 - -
Bva08g00287 579 Pfam Tetratricopeptide repeat 7 62 - -
Bva08g00287 579 PANTHER TPR REPEAT CONTAINING PROTEIN 1 578 IPR045248 GO:0006457|GO:0030544|GO:0051879
Bva08g00287 579 MobiDBLite consensus disorder prediction 113 135 - -
Bva08g00287 579 SMART tpr_5 2 35 IPR019734 GO:0005515
Bva08g00287 579 SMART tpr_5 70 103 IPR019734 GO:0005515
Bva08g00287 579 SMART tpr_5 36 69 IPR019734 GO:0005515
Bva08g00287 579 SMART tpr_5 390 423 IPR019734 GO:0005515
Bva08g00287 579 SMART tpr_5 251 284 IPR019734 GO:0005515
Bva08g00287 579 SMART tpr_5 458 491 IPR019734 GO:0005515
Bva08g00287 579 SMART tpr_5 285 318 IPR019734 GO:0005515
Bva08g00287 579 SMART tpr_5 424 457 IPR019734 GO:0005515
Bva08g00287 579 SMART tpr_5 326 363 IPR019734 GO:0005515
Bva08g00287 579 Coils Coil 362 382 - -
Bva08g00287 579 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Bva08g00287 579 Pfam Tetratricopeptide repeat 459 491 IPR001440 GO:0005515
Bva08g00287 579 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Bva08g00287 579 Pfam STI1 domain 520 571 IPR041243 -
Bva08g00287 579 Pfam STI1 domain 137 190 IPR041243 -
Bva08g00287 579 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Bva08g00287 579 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 578 - -
Bva08g00287 579 ProSiteProfiles TPR repeat profile. 390 423 IPR019734 GO:0005515
Bva08g00287 579 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Bva08g00287 579 Gene3D - 510 579 - -
Bva08g00287 579 Pfam TPR repeat 397 438 - -
Bva08g00287 579 Pfam TPR repeat 258 299 - -
Bva08g00287 579 MobiDBLite consensus disorder prediction 194 260 - -
Bva08g00287 579 Gene3D - 127 193 - -
Bva08g00287 579 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Bva08g00287 579 ProSiteProfiles TPR repeat profile. 251 284 IPR019734 GO:0005515
Bva08g00287 579 Gene3D Tetratricopeptide repeat domain 248 384 IPR011990 GO:0005515
Bva08g00287 579 Gene3D Tetratricopeptide repeat domain 389 509 IPR011990 GO:0005515
Bva08g00287 579 ProSiteProfiles TPR repeat profile. 424 457 IPR019734 GO:0005515
Bva08g00287 579 SUPERFAMILY TPR-like 8 497 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00287 Bva-Chr8 1381497 1384787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00287 1 99 U-box Gene Family AT3G07370 26.263 3.24e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00287 K09553 - vvi:100855394 954.896