Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00254 ATGGATCCAATTACAGCACATGGGCATTCTCATTCTCTTCCCTCTCCTTTCCACGCAAGAGATCTCCATCTACACCAGCAATTTCACTCTCTTCAACAGCAAAACACAGAAGAGGAACAAAGTGGAAGTAGCGGTGGACTCAACCTTGCTCAGAAAAGGGAACGTGAAGACAACAACACCAATCACGATGAAAGCAAAGATGGCGGAGGAGGTTCCGGTGAAGGTGAAATGACAAGAAGACCAAGAGGGAGACCCTCTGGATCCAAGAACAAACCCAAGCCACCCATTATCATAACACGTGACAGCGCCAATGCCCTTAGAACCCATGTGATGGAAGTGGGTGATGGCTGTGACATCGTAGAGAGTGTCTCCAACTTTGCAAGGCGCCGCCAAAGAGGGGTGTGCATTATGAGTGGCACTGGCACCGTCACCAATGTAACTCTCAGGCAACCAGCTTCTTCTAGTGCAGTCGTCACCCTTCATGGAAGGTTCGAGATCTTGTCACTAGCTGGCTCATTCTTGCCACCACCGGCTCCACCGGCTGCCACCGGTTTGACCATATACTTGGCCGGTGGCCAAGGTCAGGTGGTTGGGGGAACTGTTGTTGGCACACTCATCGCTTCTGGTCCTGTGGTGATCATGGCTGCTTCCTTTAGCAACGCTGCTTATGAAAGGCTTCCATTGGAAGAAGACGACCCTTCAATGCCACTGCAAGGAGGTTCAATTGGGTCCCCGacaggaggaggaggaagcgGCAGCAGCGGGCAACAGCAACAACTATTAGGGGATGGAGCAACTGCTCCCCTTTTCCATGGTTTGCCTCCTAATCTTCTCAATTCTATTAATCAGATGCCATCCGAGGCATTCTGGTCCACTGGTCGGCCTCCATACTA 893 0.5017 MDPITAHGHSHSLPSPFHARDLHLHQQFHSLQQQNTEEEQSGSSGGLNLAQKREREDNNTNHDESKDGGGGSGEGEMTRRPRGRPSGSKNKPKPPIIITRDSANALRTHVMEVGDGCDIVESVSNFARRRQRGVCIMSGTGTVTNVTLRQPASSSAVVTLHGRFEILSLAGSFLPPPAPPAATGLTIYLAGGQGQVVGGTVVGTLIASGPVVIMAASFSNAAYERLPLEEDDPSMPLQGGSIGSPTGGGGSGSSGQQQQLLGDGATAPLFHGLPPNLLNSINQMPSEAFWSTGRPPY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00254 297 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 297 IPR014476 GO:0003680
Bva08g00254 297 MobiDBLite consensus disorder prediction 26 48 - -
Bva08g00254 297 CDD DUF296 107 190 IPR005175 -
Bva08g00254 297 SUPERFAMILY AF0104/ALDC/Ptd012-like 103 232 - -
Bva08g00254 297 MobiDBLite consensus disorder prediction 1 97 - -
Bva08g00254 297 MobiDBLite consensus disorder prediction 50 70 - -
Bva08g00254 297 MobiDBLite consensus disorder prediction 239 260 - -
Bva08g00254 297 MobiDBLite consensus disorder prediction 230 260 - -
Bva08g00254 297 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 4 297 - -
Bva08g00254 297 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 220 IPR005175 -
Bva08g00254 297 Gene3D - 106 234 - -
Bva08g00254 297 ProSiteProfiles PPC domain profile profile. 103 240 IPR005175 -
Bva08g00254 297 PIRSF ESCAROLA 18 297 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00254 Bva-Chr8 1228533 1229426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00254 1 297 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 55.917 6.51e-93 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00254 - - qsu:112016192 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00254 08 1228533 1229426 Bva08g00254 08 1228533 1229426 ECH