Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00237 ATGGCTTCCATGCTTCAATTTTATAGCTTGAGTACCTTGTTGTTGATCACAGTCGTGTCCAAATCAACAACAGCTACAGGAATATTTCGACCCAGCCGATGGGCTCTCGCCCATGCCACATTTTATGGTGATGAGACTGCTTCTGCAACCGTGGGAGGGGCATGCGGGTATGGCAACTTGTTTCTGAACGGTTACGGGACGGATACAGCGGCTTTGAGCTCGACATTATTCAACAACGGGTATTCGTGCGGCACTTGTTACCAGATAAAATGTTACCAATCGAGTGCATGCTATAGCAATGTGCCCTTCATCACCGTGACTGCTACCAACCTTTGCCCTCCAAATTGGGCCCAACCCTCTGATAATGGCGGGTGGTGCAACCCACCACGTGCCCATTTTGACATGTCCAAACCAGCCTTCATGAAAATTGCCCAATGGAAGGCTGGCATCGTCCCTGTTCTGTTCcgcagAGTACCATGCCAAACAGGTGGAGGGCTTCGATTCTCGTTCCAAGGAAATGGGTACTGGCTACTGGTGTACGTGATGAATGTGGGAGGTGGAGGAGATATCGCAGGCATGTGGGTGAAGGGAAGCAGAACCGGATGGATTAGCATGAGCCACAACTGGGGAGCGTCATATCAGGCTTTTGCAACTCTTGGTGGCCAAGCTCTTTCTTTCAAGATAACTTCATACACGACAAAGCAGACTATTATAGCATGGAATGTTGCTCCTTCCAACTGGGCCGTAGGACTAACTTATTCCACCAATGTCAACTTCCACTG 782 0.4898 MASMLQFYSLSTLLLITVVSKSTTATGIFRPSRWALAHATFYGDETASATVGGACGYGNLFLNGYGTDTAALSSTLFNNGYSCGTCYQIKCYQSSACYSNVPFITVTATNLCPPNWAQPSDNGGWCNPPRAHFDMSKPAFMKIAQWKAGIVPVLFRRVPCQTGGGLRFSFQGNGYWLLVYVMNVGGGGDIAGMWVKGSRTGWISMSHNWGASYQAFATLGGQALSFKITSYTTKQTIIAWNVAPSNWAVGLTYSTNVNFH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00237 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
Bva08g00237 260 Pfam Lytic transglycolase 69 154 IPR009009 -
Bva08g00237 260 SMART dpbb_1 69 155 IPR007112 -
Bva08g00237 260 PANTHER EXPANSIN-A15 6 260 IPR002963 GO:0009664
Bva08g00237 260 Gene3D - 18 161 IPR036908 -
Bva08g00237 260 SUPERFAMILY Barwin-like endoglucanases 33 183 IPR036908 -
Bva08g00237 260 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Bva08g00237 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Bva08g00237 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Bva08g00237 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Bva08g00237 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Bva08g00237 260 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Bva08g00237 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Bva08g00237 260 SUPERFAMILY PHL pollen allergen 163 254 IPR036749 -
Bva08g00237 260 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Bva08g00237 260 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Bva08g00237 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Bva08g00237 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Bva08g00237 260 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Bva08g00237 260 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Bva08g00237 260 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Bva08g00237 260 PANTHER EXPANSIN 6 260 - -
Bva08g00237 260 Gene3D - 166 260 IPR036749 -
Bva08g00237 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 165 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00237 Bva-Chr8 1143929 1145477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00237 1 260 Expansin Gene Family AT1G12560 63.077 3.90e-123 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00237 - - gmx:100807807 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00237 08 1143929 1145477 Bva08g00237 08 1143929 1145477 ECH