LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g00232	ATGGATTCACGTGCTTGGAAGAATTTATTCTCCgtatttcttaatttgggAAGGGTCCATTTTTTCCGGTGtttacccaaaaaagaaaagagatcagGGCGGAGGATGGTGAGAGGAAAAACTCAAATGAAGCGCATAGAAAATGACACCAGCAGGCAAGTAACCTtctcaaagagaagaaatgggCTGCTGAAGAAGGCATTCGAGCTATCAGTGCTGTGCGATGCTGAAGTTGCACTCATCATATTCTCTCCCAGAGGGAAGCTCTATGAGTTCTCCAGTTCTAAATGTTTCAGTATAAGCAAAACGATAGAACGCTATCAAAAGAAAGTCAAGGAGCTGGATCTCAGCAATAAAGAAATCCGAGAAAATACGCAGCATGTGAACGAAGATGCTATCAGCATGGCCAAAATGCTCGAACATATTGAAGTTTCTAAACGGAAGCTTTTGGGAGATGGTTTGGATTCAAGCTCTGTCGAAGAGTTACATAAGATAGAAAACCAACTGGAACGGAGCTTAAACAGAATTAGGGCAAGAAAGAATCAATTGTTAAGGGAGCAAATTGAGAAACTCAGGGAAAAGGAAAAATGCCTActggaagaaaataacaagttACGGGAGCAGTTTCGGATTGAACAAGAGAAGCTTTCAAGCAGACAAGGGGATATGGAATTGGTGAAAGAAAGTACAAGGGAAGAGGTGGAGACGGGATTGTTCATAGGGCCACCAGAGAGACGAATTCCTTG	746	0.3834	MDSRAWKNLFSVFLNLGRVHFFRCLPKKEKRSGRRMVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSNISKTIERYQKKVKELDLSNKEIRENTQHVNEDAISMAKMLEHIEVSKRKLLGDGLDSSSVEELHKIENQLERSLNRIRARKNQLLREQIEKLREKEKCLLEENNKLREQFRIEQEKLSSRQGDMELVKESTREEVETGLFIGPPERRIP	245

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva08g00232	245	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	45	92	IPR002100	GO:0003677\|GO:0046983
	Bva08g00232	245	MobiDBLite	consensus disorder prediction	217	245	-	-
	Bva08g00232	245	Gene3D	-	48	128	IPR036879	GO:0003677\|GO:0046983
	Bva08g00232	245	PRINTS	MADS domain signature	58	73	IPR002100	GO:0003677\|GO:0046983
	Bva08g00232	245	PRINTS	MADS domain signature	73	94	IPR002100	GO:0003677\|GO:0046983
	Bva08g00232	245	PRINTS	MADS domain signature	38	58	IPR002100	GO:0003677\|GO:0046983
	Bva08g00232	245	PANTHER	MADS-BOX PROTEIN SOC1	36	241	-	-
	Bva08g00232	245	SUPERFAMILY	SRF-like	38	108	IPR036879	GO:0003677\|GO:0046983
	Bva08g00232	245	PANTHER	MADS BOX PROTEIN	36	241	-	-
	Bva08g00232	245	CDD	MADS_MEF2_like	38	106	IPR033896	GO:0000977\|GO:0045944
	Bva08g00232	245	SMART	madsneu2	36	95	IPR002100	GO:0003677\|GO:0046983
	Bva08g00232	245	Pfam	K-box region	122	206	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Bva08g00232	245	ProSiteProfiles	K-box domain profile.	122	212	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Bva08g00232	245	ProSiteProfiles	MADS-box domain profile.	36	96	IPR002100	GO:0003677\|GO:0046983
	Bva08g00232	245	ProSitePatterns	MADS-box domain signature.	38	92	IPR002100	GO:0003677\|GO:0046983
	Bva08g00232	245	MobiDBLite	consensus disorder prediction	217	231	-	-
	Bva08g00232	245	Coils	Coil	101	121	-	-
	Bva08g00232	245	Coils	Coil	156	205	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g00232	Bva-Chr8	1126140	1130919	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva08g00232	36	243	MADS-box Gene Family	AT4G22950	59.242	5.25e-80	238

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Bva08g00232		K-box	7.4e-23	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g00232	-		-	gmx:100805260	275.404

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva08g00232	08	1126140	1130919	Bva08g00232	08	1126140	1130919	ECH