Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00230 ATGCAAGAACCAAGCTTGGGAATGATGGGCGGTGGTAGTTTAAGCGGGGATTTCTCGGCTGCCTCCGGCGATCACCACCGACAACTGAAGGCAGAGATAGCGACTCATCCACTGTGTGAGCAGCTTCTAGCAGCCCATGTCTCTTGTCTCCGCGTTGCCACTCCCATCGATCAGCTTCCACTCATCGATGCCCAGTTGTCTCAATCCCACAATCTCCTACGCTCTTATGCCTCCCACCGTACCCATTCCCTTTCACCTCATGACCGCCAAGACCTTGACAATTTCCTGGCACAATATCTGATAGTGCTGTGTACTTTCAAGGAACAGCTTCATCAACATGTCAGAGTCCATGCCGTCGAGGCTGTCATGGGCTGCCGTGATATTGAAAATACCTTACAAGCTCTAACAGgAGTAAGCTTGGGAGAAGGAACTGGTGCAACAATGTCAGACGATGAAGATGATTTACAGATGGATTTCTCTTTAGATCAGGCGGGAGCCGAAGGACACGACACGATGGGGTTTGGTCCATTAATGCCTACGGAATCTGAACGGTCGCTGATGGAAAAAGTTCGTCAAGAACTCAAGATTGAGCTGAAGCAGGGTTTTAAATCAAGAATTGAAGATGTAAGGGAGGAAATATTAAGGAAACGAAGAGCTGGGAAATTACCAGGCGATACAACTTCGGTTTTGAAAAGCTGGTGGCAGCAGCATTCAAAGTGGCCCTATCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGATTGCAGCTGAAGCAAATCAATAATTGGTTCATCAATCAAAGGAAGCGCAACTGGCATAGCAACTCTCAATCAGCGACCACTTTAAAGTCGAAGCGCAAGAGGTA 872 0.4782 MQEPSLGMMGGGSLSGDFSAASGDHHRQLKAEIATHPLCEQLLAAHVSCLRVATPIDQLPLIDAQLSQSHNLLRSYASHRTHSLSPHDRQDLDNFLAQYLIVLCTFKEQLHQHVRVHAVEAVMGCRDIENTLQALTGVSLGEGTGATMSDDEDDLQMDFSLDQAGAEGHDTMGFGPLMPTESERSLMEKVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKSWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSATTLKSKRKR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00230 290 ProSiteProfiles ELK domain profile. 193 213 IPR005539 GO:0003677
Bva08g00230 290 Pfam KNOX2 domain 85 136 IPR005541 GO:0003677|GO:0005634
Bva08g00230 290 Pfam Homeobox KN domain 233 272 IPR008422 GO:0003677|GO:0006355
Bva08g00230 290 CDD homeodomain 216 277 IPR001356 GO:0003677
Bva08g00230 290 SUPERFAMILY Homeodomain-like 215 279 IPR009057 -
Bva08g00230 290 SMART KNOX2_2 82 137 IPR005541 GO:0003677|GO:0005634
Bva08g00230 290 SMART KNOX1_2 27 71 IPR005540 GO:0003677|GO:0005634
Bva08g00230 290 SMART HOX_1 215 280 IPR001356 GO:0003677
Bva08g00230 290 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 290 - -
Bva08g00230 290 ProSiteProfiles 'Homeobox' domain profile. 213 276 IPR001356 GO:0003677
Bva08g00230 290 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 290 - -
Bva08g00230 290 Gene3D - 212 287 - -
Bva08g00230 290 Pfam KNOX1 domain 29 70 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00230 Bva-Chr8 1111646 1115579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00230 1 289 Homeobox Transcription Factor Family AT1G62990 77.133 4.40e-167 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva08g00230 KNOX2 5.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00230 - - gmx:100782179 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02060 11 17262322 17266532 Bva08g00230 08 1111646 1115579 BWGD
Bva08g00230 08 1111646 1115579 Bva08g00230 08 1111646 1115579 ECH