Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00218 ATGGACATTCTCAGAGAATCATTCGACGAATCGAACTACTGTTATGCATTCCCTCTTAAAGCAGAGGCATCGTCGTCGTCGGAAACAAGCTGCTCTAACCGTCCAGTTGCTTaccactctctctctcactctgaCGAGGAAGAATCGGTGATTCTAGCATCGTCAACGGCAAAGAAACGAGCAGGCCGCAGAATATTCAAGGAGACCAGACACCCCGTTTACAGAGGAGTGCGTCGCAGGAACAATAACAAGTGGGTCTGCGAGCTGCGTGTACCTAATGACAAAGCTAGAATTTGGCTCGGAACCTACCCAACTCCTGAGATGGCGGCACGAGCTCATGACGTGGCAGCACTCGCCCTTCGGGGCAAGTCGGCTTGCCTCAATTTCGCCGACTCGGCTTGGCGCCTGCCTTTGCCGTCTTCAACCGACGCAAACGAGATTCGGAGAGTGGCCGCTAAGGCTGCTCAGCAATTTGGGCACGTCTGCGTGCACCATCAACAAAATATCAACCTTGACGCTACTACAACCACGACGGATTATCAAGTTTGTAACAGTACCGTTGGGGTTATGCAACAAGCACAAGGTCTGCATCTGGATCTAGTTCCGGAAATTATACAGTATGATGATTTGCATCATTTGCTTTTGACTATGGCAGATGAGCCTTTGAGGTCTCCACCTCCAGCTGTCATCAGAGATGGTAGGGACTGGGATGACGTGGACTTTGACTCTGAGGTGTCATTGTGGAGCTTCTCCATTTG 758 0.4921 MDILRESFDESNYCYAFPLKAEASSSSETSCSNRPVAYHSLSHSDEEESVILASSTAKKRAGRRIFKETRHPVYRGVRRRNNNKWVCELRVPNDKARIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPLPSSTDANEIRRVAAKAAQQFGHVCVHHQQNINLDATTTTTDYQVCNSTVGVMQQAQGLHLDLVPEIIQYDDLHHLLLTMADEPLRSPPPAVIRDGRDWDDVDFDSEVSLWSFSI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00218 252 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Bva08g00218 252 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Bva08g00218 252 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Bva08g00218 252 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Bva08g00218 252 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Bva08g00218 252 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Bva08g00218 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 252 IPR045277 GO:0003700
Bva08g00218 252 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677
Bva08g00218 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 252 - -
Bva08g00218 252 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00218 Bva-Chr8 1058703 1059728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00218 48 232 AP2-EREBP Transcription Factor Family AT1G12610 48.421 1.50e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva08g00218 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00218 - - pvu:PHAVU_003G212800g 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02072 11 17322615 17323890 Bva08g00218 08 1058703 1059728 BWGD
Bva08g00218 08 1058703 1059728 Bva08g00218 08 1058703 1059728 ECH