Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00217 ATGGCCTCTAGTTCTTCCAGGAGGCACCCTATGTATCATGGGATCCGTTGCCGCGGTGGAAAATGGGTGTCCGAAATCCGAGAGCCTCGTAAGACGTCACGCATATGGCTTGGCACATTCCCTACCCCAGAGATGGCGGCTGCCGCCTATGACGTGGCTTCTTTGGCCCTCAAAGGCAGCGATGCCGTTCTCAATTTCCCGGGTTTAGTTGAGAGGTACCCTAAACCCTTGTCCACATCTCCTGCTGACGTTCGTAGTGCTGCCACTGCTGCGGCCGCATTAATGGGGGCAGATGATCAGTCAAGCCACAATGTTAATAATGAACCAGTAGGAATAAATGATCGGCCAGGAAATACATATGACACTACTATTTCATCATCGTATGGAACAGAGTTTTTGGACGAGGAGGCTATATTCGATATGCCAGGTTTGCTTGTGGACATGGCTGAGGGAATGCTGCTTTCCCCTCCCAGATTAATGACCCCACCTCGTTCTGATAACTCTCCTCAGAAATCTTATGAAGAAACTAATTTGTGGAGCTATTTTTG 548 0.4927 MASSSSRRHPMYHGIRCRGGKWVSEIREPRKTSRIWLGTFPTPEMAAAAYDVASLALKGSDAVLNFPGLVERYPKPLSTSPADVRSAATAAAALMGADDQSSHNVNNEPVGINDRPGNTYDTTISSSYGTEFLDEEAIFDMPGLLVDMAEGMLLSPPRLMTPPRSDNSPQKSYEETNLWSYF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00217 182 MobiDBLite consensus disorder prediction 99 118 - -
Bva08g00217 182 SUPERFAMILY DNA-binding domain 11 67 IPR016177 GO:0003677
Bva08g00217 182 MobiDBLite consensus disorder prediction 157 176 - -
Bva08g00217 182 Gene3D AP2/ERF domain 11 68 IPR036955 GO:0003700|GO:0006355
Bva08g00217 182 CDD AP2 12 67 IPR001471 GO:0003700|GO:0006355
Bva08g00217 182 ProSiteProfiles AP2/ERF domain profile. 1 67 IPR001471 GO:0003700|GO:0006355
Bva08g00217 182 PANTHER ETHYLENE RESPONSE FACTOR 1 182 - -
Bva08g00217 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 182 - -
Bva08g00217 182 SMART rav1_2 11 73 IPR001471 GO:0003700|GO:0006355
Bva08g00217 182 MobiDBLite consensus disorder prediction 98 118 - -
Bva08g00217 182 Pfam AP2 domain 12 59 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00217 Bva-Chr8 1052987 1054462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00217 2 181 AP2-EREBP Transcription Factor Family AT5G52020 54.945 1.63e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva08g00217 AP2 5.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00217 - - jre:108990846 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02073 11 17327559 17328701 Bva08g00217 08 1052987 1054462 BWGD
Bva08g00217 08 1052987 1054462 Bva08g00217 08 1052987 1054462 ECH