Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00202 ATGGCGACGGCTAGGTCACCGAATCGTTCGTCCGAGGACATCGTCGATACAACGCCGTTCATTGGGAATTCAGGTGGGTCTTCCGATGAATTCAATTCTGGCCGTCGATTTGTCAGAAGGCAGAGCCTGCGCCAAGCCGCACGGTTCCTTAGGCAGGCAAGTAGTCGTAGGATGATGCGCGAGCCGTCGATGCTGGTCAGAGAGACAGCAGCTGAGCAATTGGAAGAGAGACAGAGCGATTGGGCATATTCTAAGCCCGTGGTGATTCTTGATATTATTTGGAATTTCGCTTTTGTTGTCGTGGCCGCCACGGTATTGGTTTTGAGCCGAGTTGAATCACCGGACATGCCTTTAAGGTTGTGGATTACGGGATATGCTCTACAGTGCCTCCTTCACATGGTCTGTGTTTGCATTGAGTATAGGAGGCGGAGGCGGTACCAGCGCACCCAATTTTCGCCATCATTGAATTCAATGCAGGGAAGGATTGGCAGCAGTGGAAATTTGAGTTCGGTTTCAAGAGAAGGCTCTGGGCAGTATGTGACATTGGCCCAACTCGATGAGGAGGGTACAAGTGTTGCAAAGCATCTGGAATCTGCAAATACAATGTTTTCATTCATTTGGTGGATTATTGGATTTTACTGGGTTTCAGCTGGTGGTCAGGCTTTAGCCCATGATTCTCCTCAGCTTTACTGGCTTTGTATAATTTTCCTGGgttttgatgttttctttgtCGTTTTCTGTGTTGCACTGGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCATGCATCATTGCGCTTTTATATGCTGTTGCAGACCAGGAAGGAGCATCAAAAGAAGACATCGAGCAGTTGTCAAAGTTCAAATTCCGAAGAATTGACAAGAATGAGAAACTTGCGGGCAACAACACCCAAGGACCTGCTGGAGGAATAATGACTGAATGTGGAACTGATTCGCCAATCGAACACATTCTTTCTGATGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTACGAAGATGGGGTTGACCTTAGACAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAGTGGCTCTATATAAATGCTACATGTCCCCTCTGCAAGTATAACATCTTGAAAAGTAGCAGTCACAGTCAAGAGGAAGTGTA 1166 0.4631 MATARSPNRSSEDIVDTTPFIGNSGGSSDEFNSGRRFVRRQSLRQAARFLRQASSRRMMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIIWNFAFVVVAATVLVLSRVESPDMPLRLWITGYALQCLLHMVCVCIEYRRRRRYQRTQFSPSLNSMQGRIGSSGNLSSVSREGSGQYVTLAQLDEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALAHDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIDKNEKLAGNNTQGPAGGIMTECGTDSPIEHILSDEDAECCICLSSYEDGVDLRQLPCGHHFHCACVDKWLYINATCPLCKYNILKSSSHSQEEV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00202 388 SMART ring_2 333 373 IPR001841 -
Bva08g00202 388 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Bva08g00202 388 PANTHER TARGET OF ERK KINASE MPK-1 5 388 - -
Bva08g00202 388 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 388 - -
Bva08g00202 388 MobiDBLite consensus disorder prediction 1 31 - -
Bva08g00202 388 Pfam Ring finger domain 332 374 IPR001841 -
Bva08g00202 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 383 IPR013083 -
Bva08g00202 388 MobiDBLite consensus disorder prediction 1 32 - -
Bva08g00202 388 CDD RING-H2_RNF111_like 332 376 - -
Bva08g00202 388 SUPERFAMILY RING/U-box 323 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00202 Bva-Chr8 980669 984870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00202 24 383 C3H Transcription Factor Family AT1G68070 48.485 3.05e-115 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00202 - - gmx:100790497 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00202 08 980669 984870 Bva06g01564 06 11184714 11189681 BWGD
Bva11g02086 11 17388387 17391721 Bva08g00202 08 980669 984870 BWGD