LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g00200	ATGGCGCCATTACCGGTTGAGCAGACTGGTGAATCAGTACCACCAATAGAATCGCAGAGATCTATCCCGACGCCGTTTCTTACGAAAACTTACCAACTTGTGGATGATCCATCTGTCGATGACCTAATTTCATGGAACGAAGATGGTAGCAGTTTCATAGTCTGGCGACCAGCTGAGTTCGCTAGAGACTTGCTTCCTAAATATTTTAAGCACAACAATTTTTCCAGTTTCGTCCGTCAGCTTAACACCTATGGGTTTCGGAAGGTTGTCCCGGATCGGTGGGAATTTGCAAATGATTGTTTCCGACGAGGAGAGAGAGGTTTGCTTCGAGACATACAACGGCGGAAAATGTCGCCGGCGCCTGGTGGGACGACCGCCGTAGCAGGTTCAGTTAATGCAGTGACGGTGGCTGCCGTGGTGAGAGCGGGAGCGGGAGCGGGAGCGGTGTCTCCAACCAACTCGGGCGAGGAACAGGTAATCTCGTCAAACTCGTCTCCAATTGCTGTACACCGCACCACAAGTTGCACCAGTGCGCCCGAGCTGTTCGAAGAGAACGAGAGACTTAGGAAAGAGAACATGCAACTGAACCACGAATTAAGTCAATTGAAGGGACTGTGTAATAACATACTCGCTTTGATGACCAATTATGCTTCTAGCCAATTAGAGTCTGCTACCACTAATGTGCCTGAAGTAGATGGGAAACCCTTGGAGCTTTTCCCGGCGAACCAACCTTTAGCTGAGCAAGTGGTTGCCGGAGGTGAGAGTGGCGGTGGTAGTTTGTGTGAAACGAAAGCAGGGGCTGAGGTGCCCAAGTTGTTTGGGGTTTCGATTGGGTTTAAACGATGTAAACGACAAGGGGAGGaagcagagaaagaagagCAAAACCAACCACAGTCCTCCCAGTCGCAGGAAAATGATCCTGGATCGGATGTCAAATCCGAGCCATTAGACGTTGATGGCAACAACTCGGATGATCAGGAGCCTCCCTGGCTAGAGCTTGGCAAATA	1007	0.4945	MAPLPVEQTGESVPPIESQRSIPTPFLTKTYQLVDDPSVDDLISWNEDGSSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERGLLRDIQRRKMSPAPGGTTAVAGSVNAVTVAAVVRAGAGAGAVSPTNSGEEQVISSNSSPIAVHRTTSCTSAPELFEENERLRKENMQLNHELSQLKGLCNNILALMTNYASSQLESATTNVPEVDGKPLELFPANQPLAEQVVAGGESGGGSLCETKAGAEVPKLFGVSIGFKRCKRQGEEAEKEEQNQPQSSQSQENDPGSDVKSEPLDVDGNNSDDQEPPWLELGK	335

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva08g00200	335	Pfam	HSF-type DNA-binding	26	115	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva08g00200	335	PRINTS	Heat shock factor (HSF) domain signature	26	49	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva08g00200	335	PRINTS	Heat shock factor (HSF) domain signature	77	89	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva08g00200	335	PRINTS	Heat shock factor (HSF) domain signature	64	76	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva08g00200	335	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR B-2B	12	327	-	-
	Bva08g00200	335	SUPERFAMILY	"Winged helix" DNA-binding domain	23	115	IPR036390	-
	Bva08g00200	335	ProSitePatterns	HSF-type DNA-binding domain signature.	65	89	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva08g00200	335	SMART	hsfneu3	22	115	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva08g00200	335	Coils	Coil	178	205	-	-
	Bva08g00200	335	MobiDBLite	consensus disorder prediction	295	309	-	-
	Bva08g00200	335	MobiDBLite	consensus disorder prediction	283	335	-	-
	Bva08g00200	335	Gene3D	-	18	116	IPR036388	-
	Bva08g00200	335	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	12	327	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g00200	Bva-Chr8	975643	980333	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva08g00200	17	335	HSF	AT4G11660	55.522	3.19e-108	319

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Bva08g00200		HSF_DNA-bind	2.7e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g00200	K09419		-	gmx:100791020	416.001