LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g00189	ATGTACTCGTCTATCCTCTCAGAACGCCCTAGGATAATATCGAAACTTCTTTGCACCTTTATCTTGGCGCGAAACATGGGCGGGGGTCCTCGCACCTTCCCAGGCGGTGTCAGCAAGTGGAAATGGAAGCGCATGCATGAGAAGCGAGCAAGAGATAAAGAGAGAAGGCTTCTTgaacaagaaaagcaaatataCCAGGCTCGAATTCGATCACATATTCGTGCACAACTCACCGGAAAACCAGACCCTAGAAACACAAGTCATGGCCCTTTAACTCCGGAGGATCACATAAAGGCCTTAGCGAATAGATTTATGAAGGAAGGAGCTGAGGATCTCTGGAACAGAAATGACGGTCCGTTAAAGTCTCCGCCTCCGTTTTCCAAAGAACTTCCAGTAACGGATCGATCGAGCAGACGCTCAGGTTCTATTGGATCGCCGGTGGATTTGAGAAAACTAATACCGGAACACGGTAACTTGGTTTCTAATAATGGAATCGCAAATTTGACCAATACAAATTGTAACTATGTGCATACTAGGAATTACTCAGTGCAAAGTCGAAGGAAATTTGGGAGGAATGACAGCTCCTCCGCCGAGGATGTTTCGAATTCTGGTTTGAAGGGAAATTTTGTAAGGTCTACTATTAGAAACTTAGTAAGTAATCCGAGAAACATGAGTAACACAAATGTGGATGATTGTagaaataataagaaagtTATGCCAAAAAGGCGGCGGAAAATTTGGAGAAATGAGAGTTCTTCCAGTGAGAATGAATCAGATTGGGATGCAGAGGGTGAACCTGGGAACTATTCATGGGGCCGTAGGTTGAATTTTGCTGGAGAAGAAGTATCAGGAAACGATGAGGATTTAAGAATTGGAAGGGATGTAAGGAAGATAGGTAGTAAGTCTTCTTTGGGGAAGTATGATATCAAGTCCAAGAGGAGGATGCTGCCTACGTTATATGACGAGGAGAAGGATCTTTCAGAACAGGTTGAGTTGATCAGGGATCAACTTAGTAAGAGGAAGTTGGCCCAGAACGAGGAGCAGAAAACTGAAGGAGAAACGATACTTAGTCAGAGAAGaTTTGATGAGTGTGGTATATCACCATTGACAGTGAAGGCGCTCTCTTCAGCTGGTTATATTCACATGACCAGGGTACAAGAGGCATCCCTTCCTCTTTGTCTTGAAGGCAAGGATACTTTAGTCAAAGCTAAAACTGGCGCTGGAAAAAGTGCGGCATATTTGCTTCCTGCTATTGAAACAGTTCTGAAGGGTGCGGGTAGCATCACCAATCGACGGGTGCCTCCAATATTTGTTCTTATACTCTGCCCTACCAGAGAACTTGCTAGCCAAATTGCTGCCGAGACAAAGGTTTTACTGAAGTATCATAATGGAATTGGAGTGCAAACTCTAGTTGGAGGCATACGATTTAAAGTTGATCAAAACCGCCTTCAATCAGATCCAAGCCAGATAATCGTTGCCACTCCTGGTAGGTTGCTGGATCATATTGAGATTAAGTCAGGAATATCTGCACGGTTAATGGGCTTGCAGATGCTTGTACTTGATGAAGTGGACCATTTACTGGACCTGGGATTTCGAAAGGATGTGGAAAAGATTGTTGATTGTTTGCCCCGTCAGAGGCAATCGTTGCTATTTTCTGCAACCATCCCAAAGGAGGTTCGCCGTATATCTCAACTTGTTTTGAAAAGGGAACATGCGTACATTGATACAGTGGGGATAGGCTGTGTGGAAACTCCAACTGAGGTAAAGCAATCTTATCTTATTGCTCCACATGAATCGCATTTTCAAATTGTTCACCATCTTTTGAAGGAGCATATCTTACAAGCTCCAGATTATAAGGTTATTGTCTTCTGTGTAACTGGGATGGTGACATCATTTATGTATCAACTTCTCcgggaaatgaaaatgaatgtcAGAGAGATGCATTCCCGAAAACCTCAACTCTATCGAACTCGTATATCAGATGAGTTCAGGGAATCCAAACAACTGATTCTTGTGTCATCAGATGTTTCAGCGCGGGGAATGAATTATCCTGATGTTACTTTAATCATTCAGGTGGGTATTCCATATGACCGAGAACTATATATACACCGTCTTGGAAGAACAGGGCGAGAAGGCAAAGAAGGGGAAGGCATATTGTTGATTGCTCCATGGGAAGAGTACTTTTTGGATGAAATTAAGGATGTTTCTCTGGAGAGATTTCCTTTACCAGATATAGATCCTCAGATAAAGCTTAAGATAGAGGATTCAATAGCAAAGATTGACAGTGACATCAAAGAAGGAGCTTATCATGCTTGGCTTGGTTATTATAACTCAATCAGAGAAATTGGGAGGGATAAGACCACTCTAGCTGAACTGGCggccaaattttcaaaatcaattggaTTACAAACACCTCCTGCTCTCTTCAGGAAGACTGCACTTAAAATGGGTTTGAAAGATATTCCTGGCATCAAAATTCGTAGATA	2486	0.4155	MYSSILSERPRIISKLLCTFILARNMGGGPRTFPGGVSKWKWKRMHEKRARDKERRLLEQEKQIYQARIRSHIRAQLTGKPDPRNTSHGPLTPEDHIKALANRFMKEGAEDLWNRNDGPLKSPPPFSKELPVTDRSSRRSGSIGSPVDLRKLIPEHGNLVSNNGIANLTNTNCNYVHTRNYSVQSRRKFGRNDSSSAEDVSNSGLKGNFVRSTIRNLVSNPRNMSNTNVDDCRNNKKVMPKRRRKIWRNESSSSENESDWDAEGEPGNYSWGRRLNFAGEEVSGNDEDLRIGRDVRKIGSKSSLGKYDIKSKRRMLPTLYDEEKDLSEQVELIRDQLSKRKLAQNEEQKTEGETILSQRRFDECGISPLTVKALSSAGYIHMTRVQEASLPLCLEGKDTLVKAKTGAGKSAAYLLPAIETVLKGAGSITNRRVPPIFVLILCPTRELASQIAAETKVLLKYHNGIGVQTLVGGIRFKVDQNRLQSDPSQIIVATPGRLLDHIEIKSGISARLMGLQMLVLDEVDHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHAYIDTVGIGCVETPTEVKQSYLIAPHESHFQIVHHLLKEHILQAPDYKVIVFCVTGMVTSFMYQLLREMKMNVREMHSRKPQLYRTRISDEFRESKQLILVSSDVSARGMNYPDVTLIIQVGIPYDRELYIHRLGRTGREGKEGEGILLIAPWEEYFLDEIKDVSLERFPLPDIDPQIKLKIEDSIAKIDSDIKEGAYHAWLGYYNSIREIGRDKTTLAELAAKFSKSIGLQTPPALFRKTALKMGLKDIPGIKIRR	828

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva08g00189	828	Pfam	DEAD/DEAH box helicase	383	561	IPR011545	GO:0003676\|GO:0005524
	Bva08g00189	828	SMART	ultradead3	378	591	IPR014001	-
	Bva08g00189	828	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	390	573	IPR014001	-
	Bva08g00189	828	Gene3D	-	583	809	IPR027417	-
	Bva08g00189	828	Gene3D	-	336	575	IPR027417	-
	Bva08g00189	828	MobiDBLite	consensus disorder prediction	74	94	-	-
	Bva08g00189	828	MobiDBLite	consensus disorder prediction	219	233	-	-
	Bva08g00189	828	MobiDBLite	consensus disorder prediction	219	265	-	-
	Bva08g00189	828	Pfam	Helicase conserved C-terminal domain	606	711	IPR001650	-
	Bva08g00189	828	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED	29	827	-	-
	Bva08g00189	828	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	607	757	IPR001650	-
	Bva08g00189	828	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	359	387	IPR014014	GO:0003724
	Bva08g00189	828	MobiDBLite	consensus disorder prediction	113	148	-	-
	Bva08g00189	828	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	436	729	IPR027417	-
	Bva08g00189	828	Coils	Coil	43	63	-	-
	Bva08g00189	828	CDD	SF2_C_DEAD	588	721	-	-
	Bva08g00189	828	PANTHER	RNA HELICASE	29	827	-	-
	Bva08g00189	828	SMART	helicmild6	631	712	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g00189	Bva-Chr8	932106	936741	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva08g00189	361	718	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.804	1.24e-39	150

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g00189	-		-	qlo:115971965	1062.75