Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00186 atgacGTTCAGCGGGACACAGCAGAAATGCAAGGCTTGCGATAAAACTGTTCATTTCGTGGACACGTTGTCGGCCGATGGGGCTGTTTATCACAAGACCTGCTTCAAATGCAGTCATTGCAATGGCCAACTTGCTATAAGCACCTACTTCTCCATGGATGGAGTCTTGTACTGCAAACCTCACTTTGAGCAGCTTTTCAAGGAGACCGGTAACTTGACAAAGAAATTCCAGACAGCTGGAATGCGTCAGAGCGACCAGCTGGCCAGGGCTCCCAGCAAACTCTCCGCCTTCTTCTCTGGTACTCAAGACAAATGTTCATCCTGCAAGAAAACTGTATACCCGTTGGAGAAGATCACCGTGGAAGGAGAATTTTACCACAAGTCATGCTTCAGATGCGCTCATGGGGGATGTTTCTTGAACGCTTCGTCCTATGCTGCTCTTGATGGATTTGTTTACTGCAAGCACCATTTTGCCCAGTTGTTCAAGGAGAAAGGTAGCTACAGTTATCTCAGCAAGGCAGCTTCAATGAGGAAAAACGAATTGCAACAGGCAGCGGAGAATGCCGaatcagaatcagaatcaaaACCATCAGAAGCCGAGACAACaaaggaaggagaagaagaagccgCTCAAGATCAATA 641 0.4431 MTFSGTQQKCKACDKTVHFVDTLSADGAVYHKTCFKCSHCNGQLAISTYFSMDGVLYCKPHFEQLFKETGNLTKKFQTAGMRQSDQLARAPSKLSAFFSGTQDKCSSCKKTVYPLEKITVEGEFYHKSCFRCAHGGCFLNASSYAALDGFVYCKHHFAQLFKEKGSYSYLSKAASMRKNELQQAAENAESESESKPSEAETTKEGEEEAAQDQ 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00186 213 MobiDBLite consensus disorder prediction 180 213 - -
Bva08g00186 213 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Bva08g00186 213 MobiDBLite consensus disorder prediction 191 213 - -
Bva08g00186 213 Gene3D Cysteine Rich Protein 5 97 - -
Bva08g00186 213 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 210 - -
Bva08g00186 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
Bva08g00186 213 Coils Coil 171 191 - -
Bva08g00186 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 169 - -
Bva08g00186 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Bva08g00186 213 Gene3D Cysteine Rich Protein 99 169 - -
Bva08g00186 213 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Bva08g00186 213 Pfam LIM domain 10 65 IPR001781 -
Bva08g00186 213 Pfam LIM domain 105 160 IPR001781 -
Bva08g00186 213 PANTHER OS06G0237300 PROTEIN 1 210 IPR045268 GO:0051015
Bva08g00186 213 ProSiteProfiles LIM domain profile. 103 163 IPR001781 -
Bva08g00186 213 CDD LIM1_SF3 6 68 - -
Bva08g00186 213 SMART lim_4 104 156 IPR001781 -
Bva08g00186 213 SMART lim_4 9 61 IPR001781 -
Bva08g00186 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00186 Bva-Chr8 919933 921327 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Bva08g00186 LIM 1.3e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00186 - K24413 zju:107429947 321.627