Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00177 ATGGAAAATTTAACCCTCACGAGTTTGCTAGAGAAGATAGCATCAGACTTTCCCAACCGTCGGGCTATTTCAGTTTCTCAAAAATTCGATCTCACCCATGCCCGCTTGCACCAGTTAATTGGTCACGCTGCCTCTCGCTTACTCTCCCACGGCATCAACGCCGGTGACGTCGTCGCCCTCGCCTTCCATAACAACGTAGAGTTCGTGATATTGTTCTTGGCCGTGATTAAATGCCGAGCCATAGCCGCGCCATTAAATCCGGCTTACACTGCTGAAGAATTTGAGTTCTACTTGTCTGACTCGGAAGCCAAGCTTCTGATAACACGAGATGAAGGGATTGAGTCAGCTCGAGGTGCAGCTTCAAAACTGAACCTCCCTCGCGTGACAGCCTCGCTCTCCGGAGCCAATGCATTTGTGACGCTCTCGTCCTCGAAGAACGATTCGGAGCTACGAGACGTCGCCAAAATCGTCAACGAGCCTTCCGACGTGGCACTTTTCCTTCACACCTCAGGCACCACAAGTCGTCCCAAAGGAGTGCCTTTAACTCAGTTTAACTTGGCATCATCGGTTCGACATATCAAATCGGCCTATAAACTCACTATGTCAGACTCCACCGTTCTGGTTCTCCCTCTGTTCCACGTCCATGGTTTAGTCGCTGCATTGTTGAGTTCGCTGGTGGCCGGCGCGGCCGTGACGCTTCCGGCAGCGGGACGATTCTCAGCTTCGACGTTTTGGTCCGACATGGTCACGTATGATGCCACGTGGTATACAGCAGTTCCTACGATTCACCAGATCATACTTGATCGGCACCTATATGAACCCGAAGCAACATATCCAAATCTCCGATTTATTCGGAGCTGCAGCGCCGCATTAGCACCCTCGGTATTAACAACGCTCGAAGAGGTGTTCGGCGCGCCTGTTCTCGAAGCTTATGCAATGACGGAAGCGTCTCATCAAATGGCGACAAACCCGTTACCCGAACATGGCCTTCGTAAACCCGGGTCAGTTGGAAAACCCACTGGACTGGAAATGGCTATTTTGGACGAACATGGGCTGCCACAAGAAGAGGGCGTTCGTGGTGAAGTGTGTGTGAGGGGTCCAAACGTGACATTGGGCTATAAGAACAATGAGAATGCTAATGAGGCTGCATTCAAGTTCGGGTGGTTTCATACAGGAGATATCGGGTTTTTTGATTCAGACGGGTATTTGCACCTGGTTGGGAGGATCAAAGAGCTAATTAACCGTGGAGGGGAGAAGATATCACCCATAGAAGTTGATTCTGTGCTTGTATCACATCCAAACATTGCTCAAGCGGTTGCTTTTGGAGTCCCTGATGCTAAATACGGCGAAGAGATAAATTGCGCAGTAATTCCAAAAGAAGGGTCCAAGATTGAGGAGTGGGAAGTGCTGCAATTTTGCAGGAAGAATCTTGCAAGCTTCAAGATCCCAAAGAAGGTGTTCATCGCTGACTCTCTCCCAAGAACTGCTACGGGAAAGATACAGCGCCGGGTTGTAGCAGAGCATTTCCTAGCTCAACATTTTAAAACTGGAGCTTA 1556 0.4974 MENLTLTSLLEKIASDFPNRRAISVSQKFDLTHARLHQLIGHAASRLLSHGINAGDVVALAFHNNVEFVILFLAVIKCRAIAAPLNPAYTAEEFEFYLSDSEAKLLITRDEGIESARGAASKLNLPRVTASLSGANAFVTLSSSKNDSELRDVAKIVNEPSDVALFLHTSGTTSRPKGVPLTQFNLASSVRHIKSAYKLTMSDSTVLVLPLFHVHGLVAALLSSLVAGAAVTLPAAGRFSASTFWSDMVTYDATWYTAVPTIHQIILDRHLYEPEATYPNLRFIRSCSAALAPSVLTTLEEVFGAPVLEAYAMTEASHQMATNPLPEHGLRKPGSVGKPTGLEMAILDEHGLPQEEGVRGEVCVRGPNVTLGYKNNENANEAAFKFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDSVLVSHPNIAQAVAFGVPDAKYGEEINCAVIPKEGSKIEEWEVLQFCRKNLASFKIPKKVFIADSLPRTATGKIQRRVVAEHFLAQHFKTGA 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00177 518 CDD FACL_fum10p_like 18 507 IPR045310 GO:0016874
Bva08g00177 518 Pfam AMP-binding enzyme 11 415 IPR000873 -
Bva08g00177 518 Pfam AMP-binding enzyme C-terminal domain 424 499 IPR025110 -
Bva08g00177 518 ProSitePatterns Putative AMP-binding domain signature. 166 177 IPR020845 -
Bva08g00177 518 Gene3D - 409 511 IPR045851 -
Bva08g00177 518 PANTHER OXALATE--COA LIGASE-LIKE 2 512 - -
Bva08g00177 518 PANTHER ACYL-COA SYNTHETASE 2 512 - -
Bva08g00177 518 SUPERFAMILY Acetyl-CoA synthetase-like 4 511 - -
Bva08g00177 518 Gene3D - 1 408 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00177 Bva-Chr8 874237 876627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00177 3 508 Monolignol Biosynthesis Gene Families AT4G05160 31.048 1.08e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00177 K22133 - jre:109014451 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00177 08 874237 876627 Bva08g00177 08 874237 876627 ECH