Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00169 ATGCTTTTGTGTGATAGATGTGATAAGGGCTGGCATATGTATTGTCTTTCCCCACCATTGAAGCAAATTCCTCCAGGAAATTGGTATTGCTTCAGTTGCTTGAATTCTGACCAGGACAGCTTTGGTTTTGTGCCTGGTAAACATTACGCTTTAGAAGCTTTTAGGCACATGGCTGACCGATCCAGGAAGAGATGGTTTGGACCAGGGTCTGTTTCGAGGACACAAATAGAGAAGAAGTTTTGGGAAATTGTGGAGGGATCGGTTGGTGAGGTTGAGGTTATGTATGGAAGTGACTTGGACACATCAGTCTATGGGAGTGGTTTTCCGCGTGCAACTGATCAGAAACCACAAGCAATTGATGCAAGATTATGGGATGAATACTCAGCTAACCCATGGAATCTTAATAACTTGCCTAAATTGAAAGGGTCAATGCTTCAAGCCGTTCATCACAACATAACTGGTGTTATGGTACCTTGGCTGTATATTGGGATGCTATTCTCTTCATTTTGCTGGCATTTTGAGGATCATTGCCTTTACTCAATGAATTATCTACACTGGGGAGAGCCAAAATGTTGGTACAGTGTTCCTGGTAGTGAAGCAAGTGCTTTTGAGAAGGTAATGAGGAGCAGTCTTCCTGATCTTTTCGATGCACAACCAGATCTGCTTTTTCAGCTTGTCACCATGTTAAACCCATCCGTCTTGCAGGAAAATGGTGTACCAGTCTACAGTGTACTTCAGGAGCCCggaaattttgttattaccTTCCCCCGGTCTTACCATGGAGGTTTTAATCTTGGTTTAAATTGTGCAGAGGCAGTTAATTTTGCTCCTGCTGACTGGCTACCGCATGGTGCTTTTGCAGCTGATCTGTATCAGCGGTTTCATAAAACTGCTGTATTGTCTCATGAGGAGCTTCTTTGTGTAGTTGCACAGTATAGTGACATCAATGACAGAGTGTCTCCTTATTTGAAGAAAGAGTTGCTCAGGATATCTGATAGAGAGAAATCTTGGAGAGAGAAACTTTGGCGAAATGGTATCATTAAATTCTCTCGCATGGCTTCTCGTGAGTGTCCTCAATATGTGGGGACTGAAGAGGATCCAACATGTGTTATTTGTCAGCGATATCTATATCTTTCTGCCATTGTGTGCAGTTGCAGGCCAACTGATTTTGTATGCCTGgagCATTGGAAACACCTTTGTGAATGCAGAACTGTAAAACTTCGTCTTCTCTATCGTCATTCACTGGCAGAATTGTATGACTTGGCACTTTCTATGGATAAATATACTTCTGAGGAGAAAGCACAGTGTCTGAATGTAAGAAGGCAATTCTCTAGTCCGGGTGCTTTAACCAAAAAGGTAAAAGGTGGCCAAGTTGCTTTTACAGAACTTTCTATGCAATGGCTTCTGCAATCTAGTAAGATTCTTCAGAATCCTTTCTCAAGTGATGCTTTTGTATCTGCACTAAAGGGAGCTGAACAATTTCTTTGGGCTGGTCCTGAGATGGATTCTGTGAGGGATATGGTGAGGAGTTTGATTCAAGCTCAAACATGGGCTGAGGGGGTAAGAGATTGTGTGAGAAAGATTGAGTCCTGCTTATCTCTCCAGGACTCTGGTGTAGAGAAAGTTCACTTAGAATTTGTTGAAGAATTTCTCAGTTTGGATCCTGCACCATGTAATGAGCCTGGTCATCAGAAGTTGAAGGAATATGCAGAAGAGGCGAGGTTGTTAACTCAGGAGATTGATACTGTCTTGTCAATATGTTCAAAGATGTCTGAGTTGGAAGTTTTTTACTCCAGAGTTTGTGGTTTACCTGTCTACGTGAAAGAGtgtgaaaaattagaaaggcAAATTTCTTTGGCTAAGGCATGGCTGGATAGTGTTAGAAAGTGCACTTCAGTGGAACATCCTGCTGCAGTAGAGATTGACGTTCTGTACAAATTGAAGTCAGAGATTTTAGAGCTTCAAGTTCAACTTCCAGAGATAGACATGCTTCAGAATCTGTTAAGCAAAGCTCAATATTGTTGTGCCCACTGTCGTGAGATATTGGAAGGACCTATGAATTTAAAGAGCGTTGGTGTAATGCTTAAGGAATGGGATAATTTTACCGTTGATGTACCAGAGTTAAAGCTTCTAAGGCAATACCATGCGGATGTCATTTCATGGGTTTCCCGCTTTAATGGTGTTTTAAGGACAGTGCATGAGCGGGAGGATCAAGATAATGTAATTGATGAATTGAAACAGATTCTAGAAGATGGCTTATCTTTGAAAATTCAAGTTGATGAGTTGCCTCTTGTTGAGGTTGAGCTGAAGAAAGCTTATTGTAGGGAGAAGGCTCTGAAGGCACATAGGTCTAAGATGCCTCTGGAATTCATTCAGCAACTGATGAAGGAGGCCAGAGTgCTACAAATTGAGGGAgagaaattatttgtcaatttaTCTGGAGTACTTGCTGTTGCATTGTCTTGGGAGCAAAGGGCCAGGGATATTCTTTCACATGAGGCTTCAATTTCTGACTTTGAGGACATGTTAAGGGCTTCAGAAAACTTATTTGTAATTCTTCCTTCTCTTAATGATATCAAGGATGCAGTACTGGAAGCTAATTCCTGGTTAGAGAATTCAAAACCATATTTAGCTTCTCCTACTTCTGCTTCAACTTCCATGCGGAAATTTGAGGACCTGCAGATGTTGGTTTCTCAATCAGAGCttcttaaaatatctttgGAAGAACGAAGGATGCTGGCAACAGTCCTCAAGAAGTGCAAAGAATGGCAGCATGATGCTTGTTCAGTACTGAGTGATGCTCGGTCCCTTTTTGAATGGGATAACATTGATAATGAAATATGTGGTAGCCTAATATCCAAAGTTGAAGGTTTGATTGCAAGAACGCTATCTGTCACAAGATATGGTTTATCACTCCATTTTGACTTCTACGAGATTCCTGAGCTTCAAGCCACTTGTTCTACACTGCAATGGTGCAAAAAGGCCCTTTCTTTCTgcaatatttcttcttctttagaGGATGTTTTGGAGGTTGCAGAAGACATTCCTCATACCTCTGTTTCTTCTACTATGTTGAATATGCTGGTTGATGGGGTTAAATGGCTTAGGCAAGCCTTTGAGGTAATTTCTGGACCACAAAATTCCAGAAGATGCAAGTTGAGTAATGTTGAAGATATTCTTACTGGTTACAAGACCATTCGTATGCCCTTTGCAGCGGTAATCTGTCTTCTTAAAGAAGCCATTGGAAAACATAAGTTGTGGCAAGAACAGGTGCAACAATTTTTTCATCTAAATTATAGGGAACGATCTTGGTCATCAATGTTGCAGCTCAAGGAACTTGGAGAGACTGTTGCCTTTAGTTGCTCAGAACTGAATTTGATTGTATCTGAAGTTGAAAAGGTGGAGAGTTGGAAGAAACGCTGCATGGATAGTATAGGGGCTTTGGTCCAAGATAAGAATTCATTGCTAGATGCTCTGCAGAAGatAAAACAGACTCTCGATAGATCATTATTCATATATGGCAAGTTGCAAGATTGGAAAGATAAAAACTTGTGCACCTGCTGCTTTAATGTTTTTGAAGATCAGGAGTTTCTTACTTGTTTGACTTGTAAGGACTGCTATCATTTGCGGTGCATTGGAACAAGTGCATTAGATAGAGATCATGAAGGTTATAAGTGCACTTATTGTCAAATTTTGAAGGgtgaattaaattatcaaaatggaGGTGGTCCCCGGAGATTTGGGGGGAATCATGCTGACCTGAAAACCCTTCATGAACTTCTTTCAGATACAGAAAGCTTTTGCGTGTGGGTTTCTGAACGAGATGTTCTAAGCCTACTTGTGGAGCGAGCCCATGCATGCAAATCTTGCTTGAGAGAAATAGTGGATTTTGCATCAGCTTTTGTGGACAAAGATTTTAGTGCCGTCTCTGAAAAATTGACCATTGCTATAAAGGCCATTGAAGTGGCTGGTATCTATGATCAGCATGATGATGGTGACCTTGAGCAGGCTTTAGCGAGACATTTGTGGAAAGTTCAAGTCAGTGAATTGCTAATTGGTCTTCAAAAGCCTTCTATCCAGCAGATTCGGAAGCATCTGAAAGAGGGACTGGCTATGGAAATACTGCCTGAAGATTACTATATGCTGAAACTTACAAAAATGAATTGCATTGGTTGGCAGTGGGCAGAACTAGCGAAGAAGGTTGCAGTTGATTCTGGGGCACTCAGTTTAGATAAAGTTTTCGAACTTATTGTAGAAGGTGAAAACTTGCCTGTTGATGTACAGGAGGAACTCATGATATTAAGAAATCGAAGTATGCTTTATTGCATCTGCCGAAAGCCCTTAGATCCCGGAAGGATGATTGCCTGCGATCAATGTGGGGAGTGGTATCACTTTGATTGCGTGAAATTACCATACACAGTAGAGGCGTACATCTGTCCCGCATGTAACCCATGTACACAAGTATTGTCCACAACATCGCTTGACCATGAGAGGTTAACCAGTGCCAAGTTTGAAGAGCCTAGAACTCCATCTCCAAGGCAcacaaaaccaagaaagaaacagaagagAGATTCGGCCAGTCTGACTCCGAATATGTTTGTGGCAGTGCAACCCAAGAATCCAGATAGTAATGTTAGGTTTTCCAGCGGGATTGAGTGTCTATGGTGGCGAAATCGAAAGCCTTTCAGGAGAGCAACTAAGAAACGTCTTGATCTTGGAAGTCTTTCTCCATTTATATGTACACAACGATA 4751 0.4043 MLLCDRCDKGWHMYCLSPPLKQIPPGNWYCFSCLNSDQDSFGFVPGKHYALEAFRHMADRSRKRWFGPGSVSRTQIEKKFWEIVEGSVGEVEVMYGSDLDTSVYGSGFPRATDQKPQAIDARLWDEYSANPWNLNNLPKLKGSMLQAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCLYSMNYLHWGEPKCWYSVPGSEASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSVLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGAFAADLYQRFHKTAVLSHEELLCVVAQYSDINDRVSPYLKKELLRISDREKSWREKLWRNGIIKFSRMASRECPQYVGTEEDPTCVICQRYLYLSAIVCSCRPTDFVCLEHWKHLCECRTVKLRLLYRHSLAELYDLALSMDKYTSEEKAQCLNVRRQFSSPGALTKKVKGGQVAFTELSMQWLLQSSKILQNPFSSDAFVSALKGAEQFLWAGPEMDSVRDMVRSLIQAQTWAEGVRDCVRKIESCLSLQDSGVEKVHLEFVEEFLSLDPAPCNEPGHQKLKEYAEEARLLTQEIDTVLSICSKMSELEVFYSRVCGLPVYVKECEKLERQISLAKAWLDSVRKCTSVEHPAAVEIDVLYKLKSEILELQVQLPEIDMLQNLLSKAQYCCAHCREILEGPMNLKSVGVMLKEWDNFTVDVPELKLLRQYHADVISWVSRFNGVLRTVHEREDQDNVIDELKQILEDGLSLKIQVDELPLVEVELKKAYCREKALKAHRSKMPLEFIQQLMKEARVLQIEGEKLFVNLSGVLAVALSWEQRARDILSHEASISDFEDMLRASENLFVILPSLNDIKDAVLEANSWLENSKPYLASPTSASTSMRKFEDLQMLVSQSELLKISLEERRMLATVLKKCKEWQHDACSVLSDARSLFEWDNIDNEICGSLISKVEGLIARTLSVTRYGLSLHFDFYEIPELQATCSTLQWCKKALSFCNISSSLEDVLEVAEDIPHTSVSSTMLNMLVDGVKWLRQAFEVISGPQNSRRCKLSNVEDILTGYKTIRMPFAAVICLLKEAIGKHKLWQEQVQQFFHLNYRERSWSSMLQLKELGETVAFSCSELNLIVSEVEKVESWKKRCMDSIGALVQDKNSLLDALQKIKQTLDRSLFIYGKLQDWKDKNLCTCCFNVFEDQEFLTCLTCKDCYHLRCIGTSALDRDHEGYKCTYCQILKGELNYQNGGGPRRFGGNHADLKTLHELLSDTESFCVWVSERDVLSLLVERAHACKSCLREIVDFASAFVDKDFSAVSEKLTIAIKAIEVAGIYDQHDDGDLEQALARHLWKVQVSELLIGLQKPSIQQIRKHLKEGLAMEILPEDYYMLKLTKMNCIGWQWAELAKKVAVDSGALSLDKVFELIVEGENLPVDVQEELMILRNRSMLYCICRKPLDPGRMIACDQCGEWYHFDCVKLPYTVEAYICPACNPCTQVLSTTSLDHERLTSAKFEEPRTPSPRHTKPRKKQKRDSASLTPNMFVAVQPKNPDSNVRFSSGIECLWWRNRKPFRRATKKRLDLGSLSPFICTQR 1583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00169 1583 Pfam C5HC2 zinc finger 369 420 IPR004198 -
Bva08g00169 1583 CDD PHD_RSF1 1 33 - -
Bva08g00169 1583 ProSiteProfiles Zinc finger PHD-type profile. 1 36 IPR019787 -
Bva08g00169 1583 ProSitePatterns Zinc finger PHD-type signature. 1442 1482 IPR019786 -
Bva08g00169 1583 Pfam JmjC domain, hydroxylase 159 275 IPR003347 -
Bva08g00169 1583 ProSiteProfiles JmjC domain profile. 126 292 IPR003347 -
Bva08g00169 1583 SMART PHD_3 1184 1230 IPR001965 -
Bva08g00169 1583 SMART PHD_3 1 34 IPR001965 -
Bva08g00169 1583 SMART PHD_3 1441 1483 IPR001965 -
Bva08g00169 1583 Gene3D Cupin 1436 1550 - -
Bva08g00169 1583 Pfam PLU-1-like protein 689 924 IPR013637 -
Bva08g00169 1583 Pfam PLU-1-like protein 866 1140 IPR013637 -
Bva08g00169 1583 SMART cupin_9 126 292 IPR003347 -
Bva08g00169 1583 MobiDBLite consensus disorder prediction 1500 1532 - -
Bva08g00169 1583 Gene3D Cupin 26 276 - -
Bva08g00169 1583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 25 IPR013083 -
Bva08g00169 1583 SUPERFAMILY FYVE/PHD zinc finger 1176 1231 IPR011011 -
Bva08g00169 1583 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 9 669 - -
Bva08g00169 1583 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 669 - -
Bva08g00169 1583 SUPERFAMILY FYVE/PHD zinc finger 1 36 IPR011011 -
Bva08g00169 1583 Pfam PHD-finger 1 35 IPR019787 -
Bva08g00169 1583 Pfam PHD-finger 1441 1485 IPR019787 -
Bva08g00169 1583 SUPERFAMILY Clavaminate synthase-like 82 310 - -
Bva08g00169 1583 SUPERFAMILY FYVE/PHD zinc finger 1436 1491 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00169 Bva-Chr8 826840 841663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00169 38 426 JUMONJI Transcription Factor Family AT4G20400 40.528 2.78e-92 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva08g00169 PLU-1 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00169 K11446 - gmx:100819576 2378.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00169 08 826840 841663 Bva08g00169 08 826840 841663 ECH