Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00168 ATGAGAAAAGGTAGACCTAGGGCTGTGGAAAAAGGTGTAGTAGGGCAAAGCCTGAATGCTTCATCGTCTGGGTTACTGAATATACCATCAGGTCCTGTATATTACCCCAGTGAGGATGAATTCAAGGACCccttagaatatatatataagattagaCCCGAGGCTGAGCCATATGGGATTTGTAGGATTGTTCCACCAAAGAATTGGAAACCCCCATTTGCTTTGGATCTcgattctttctcttttcccacTAAAACACAAGCCATTCACAAGTTGCAGGCACGTCCTGCTGCATGTGACTCCAAGACTTTTGAGTTGGAGTACTGTAGGTTCATAGAGGATCATTGTGGCAAAAAGTCAAAGAAGAGGGTTGTATTTGAGGGCGAAGATTTGGACTTGTGCAAATTATTTAATGCGGTTAAGCGGTTTGGTGGATATGATAAGGttgtgaaggaaaaaaaatgggggGATGTTTCTAGATTTGTGAGGTCGGGGAAGAAAATTTCAGACTGTTCAAAGCATGTCTTATGTCAACTATACCGAGAGCATTTATACGATTACGAGAGTTACTATAATCAGTTGAATCAAGAGATAGCTTGGAGTTCGAATAGAGGCTCCCATGAGGACGAAAAAAGTGACCAGCGTGTCCAACATTCAGGATCCAAGAGAATGCAAGAAGTAACAATTGTTTA 692 0.3815 MRKGRPRAVEKGVVGQSLNASSSGLLNIPSGPVYYPSEDEFKDPLEYIYKIRPEAEPYGICRIVPPKNWKPPFALDLDSFSFPTKTQAIHKLQARPAACDSKTFELEYCRFIEDHCGKKSKKRVVFEGEDLDLCKLFNAVKRFGGYDKVVKEKKWGDVSRFVRSGKKISDCSKHVLCQLYREHLYDYESYYNQLNQEIAWSSNRGSHEDEKSDQRVQHSGSKRMQEVTIV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00168 230 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Bva08g00168 230 MobiDBLite consensus disorder prediction 203 230 - -
Bva08g00168 230 Pfam ARID/BRIGHT DNA binding domain 121 188 IPR001606 GO:0003677
Bva08g00168 230 PANTHER LYSINE-SPECIFIC DEMETHYLASE 25 193 - -
Bva08g00168 230 MobiDBLite consensus disorder prediction 203 220 - -
Bva08g00168 230 SMART bright_3 99 193 IPR001606 GO:0003677
Bva08g00168 230 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 25 193 - -
Bva08g00168 230 SMART JmjN_1 30 71 IPR003349 -
Bva08g00168 230 Pfam jmjN domain 32 65 IPR003349 -
Bva08g00168 230 Gene3D Cupin 13 160 - -
Bva08g00168 230 CDD ARID 100 188 - -
Bva08g00168 230 SMART ARID_2 95 188 - -
Bva08g00168 230 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Bva08g00168 230 SUPERFAMILY ARID-like 80 204 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00168 Bva-Chr8 826840 828366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00168 28 95 JUMONJI Transcription Factor Family AT1G30810 55.556 1.88e-18 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva08g00168 ARID 2.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00168 K11446 - vvi:100261599 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00291 05 1419474 1427345 Bva08g00168 08 826840 828366 BWGD