Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00155 ATGGGTCGAGCAAGATTGCCAGTGAAGTTCATCGAAAAGGAGAAATGCCGTAGGGCGACTTTCAACAAGAGAACGAAGGGattaaagaagaaatgttATGAACTTTCGACTCTTTGCGGTGTTGATGCTGCCATGATAGCGTATGGCCAAGAATCTGAGAATGCTGAACCAGAGATTTGGCCTGAAGACCCGAGAGAGCTGAGGCGTATTGTCGAAAGATACCAGGCTAAGATTGCTGAGCAGCGGCCCAAGATCTATGACGTGACTGCCTTCTTCAAAGATAGGAAGAATAAGGTTGAAGCTGAGATTGCCAAAGTGCAGAAAAGGATCCGTGAGGCCATGTATCCAACTTGGCATGACAGTTTTAACAATCTAGCAGAGGAATCATACAGATTGTTTATTGACGCCTTGGATGCCAAGCTCGAAGCTTGTAAGCAAAGGATCACCCACTTGAAGCGAATTCGCCACAACCTAAAGGAAAATACACCAGCTGAATCAGTCGCAAATGGAAGCCACCGCCATTTCATGCTCAACATCCCCCAAAGCCAGCCTGCCCTTGCCCTTGCTGATAACAATTATCAGCTGCCATATTATCCACCACCTCAATTTGATGAGAGTTCTTCATCTGTTATGTTTCATCTCGATCCAAATCTGCtgccaaaaaataatgaaatggaGAATCATTGGAGTGGATTCCCAACTAGTTATCATAATGGAAtgcaacttcaaaattttaacaattatcATCCTGCTGCTGCCGAACCTGCTCTTCAGAAGAATATTCCTTCTCCGAATATCCAGTACGAAGCAGCTAATTTTCCGGCTAGGGCATCTCCATTGCAAGGACTTCAACCAAATAGCTTCTATTGTATGCTTCAAGACGAGACACTCAACTATACCAATTTAAACAAGTGGGCATG 920 0.4217 MGRARLPVKFIEKEKCRRATFNKRTKGLKKKCYELSTLCGVDAAMIAYGQESENAEPEIWPEDPRELRRIVERYQAKIAEQRPKIYDVTAFFKDRKNKVEAEIAKVQKRIREAMYPTWHDSFNNLAEESYRLFIDALDAKLEACKQRITHLKRIRHNLKENTPAESVANGSHRHFMLNIPQSQPALALADNNYQLPYYPPPQFDESSSSVMFHLDPNLLPKNNEMENHWSGFPTSYHNGMQLQNFNNYHPAAAEPALQKNIPSPNIQYEAANFPARASPLQGLQPNSFYCMLQDETLNYTNLNKWA 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00155 306 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bva08g00155 306 Gene3D - 14 99 IPR036879 GO:0003677|GO:0046983
Bva08g00155 306 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva08g00155 306 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva08g00155 306 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva08g00155 306 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Bva08g00155 306 PANTHER PROTEIN, PUTATIVE-RELATED 3 185 - -
Bva08g00155 306 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Bva08g00155 306 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Bva08g00155 306 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Bva08g00155 306 Coils Coil 134 161 - -
Bva08g00155 306 PANTHER MADS BOX PROTEIN 3 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00155 Bva-Chr8 754993 755913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00155 11 242 Type I MADS-box Gene Family AT5G58890 28.270 2.68e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva08g00155 SRF-TF 5.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00155 - - lang:109350953 212.231