Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00152 ATGGAGAATAAGGAGGAAGATGTAAAGCTTGGAGCAAACAAATACTCAGAAAGACAGCCCTTGGGCACAGCAGCTCAGAGTGACAAGGATTACAAGGAACCACCACCAGCTCCTCTGTTCGAGCCAGGAGAGCTCAAGTCATGGTCCTTTTACAGAGCTGGGATCGCAGAGTTCATGGCCACCTTCCTGTTCCTCTACATTACCGTCTTGACTGTGATGGGTGTCAACAGGTCCCCTAACAAGTGTGCCTCTGTTGGCATTCAAGGGATTGCATGGGCTTTTGGCGGTATGATATTTGCCCTTGTCTACTGCACAGCAGGAATATCAGGTGGACACATCAATCCGGCAGTGACCTTCGGTCTGTTTTTGGCAAGGAAGTTGTCTCTGACAAGAGCCCTCTTCTACATAATCATGCAGTGTCTTGGAGCTATCTGCGGTGCTGGTGTTGTAAAGGGCCTTGAGGGGAATGCTCGCTATGAATTGTACAAAGGTGGAGCTAATTTTGTGAGTCATGGATACACCAAGGGCGATGGCCTTGGCGCTGAGATTGTTGGCACCTTCGTACTTGTCTACACTGTTTTCTCTGCAACTGATGCTAAAAGAAATGCTAGAGACTCTCATGTCCCTATTTTGGCCCCTCTTCCCATTGGGTTTGCGGTGTTCTTGGTCCACTTGGCCACCATCCCCATCACGGGAACTGGTATCAACCCAGCTAGGAGTTTGGGTGCTGCTATCATCTTCAACAGAGACCTTGCCTGGGACGACCACTGGATCTTTTGGGTTGGACCTTTCATTGGAGCAGCACTTGCTGCTGTATACCACCAGATAGTTATAAGGGCCATTCCTTTCAAGACAAGGGCTTA 863 0.4925 MENKEEDVKLGANKYSERQPLGTAAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNRSPNKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAICGAGVVKGLEGNARYELYKGGANFVSHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNRDLAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKTRA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00152 287 PANTHER AQUAPORIN PIP1-3 1 286 - -
Bva08g00152 287 MobiDBLite consensus disorder prediction 1 36 - -
Bva08g00152 287 SUPERFAMILY Aquaporin-like 44 279 IPR023271 -
Bva08g00152 287 Pfam Major intrinsic protein 44 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g00152 287 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g00152 287 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g00152 287 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g00152 287 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g00152 287 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g00152 287 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g00152 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 286 IPR034294 -
Bva08g00152 287 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Bva08g00152 287 TIGRFAM MIP: MIP family channel proteins 56 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g00152 287 CDD MIP 52 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g00152 287 Gene3D Glycerol uptake facilitator protein. 37 285 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00152 Bva-Chr8 740209 741695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00152 1 287 Major Intrinsic Protein MIP AT3G61430 86.411 3.08e-178 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00152 K09872 - gmx:121174914 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00152 08 740209 741695 Bva08g00152 08 740209 741695 ECH