Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00130 ATGGCTCGACAGCTGTGTGAAGATAAATCGAGGGATTTGGTATCATCATCAGCTGGATTCTGCTACTCGGATGTATCGTCAGGTTCTGGTAACCCAACGATTCAAACCCAGATGGTGAACCAGATCCAAGGCTTTGTCTCGGTCTCCGAATCCGACCAAGACATGTTCAACCTTAGCTCGGGGATGGAGATAATAGGGTTTTCCAAGAATCTACAGCAACAGACTGAAACTAACCCTATGATGTGGAAGAGTTTCTTTGCCAAACCTGCTCCCTCCTCTTCAAAGACCGCCAATTTTTACCAGCATAAGGAATATAATAAACCAGATTTCACGTCTGGGATTTCCGAAACAACCAGCGACAATCTAATAGTTGCGCCTCAAGACCCCGCCTCATGGCAAGACAGCAGATTATTAGTCGAGGATTCCTCCATGAGGTGTGTGTTTCCTTgtgaaggaaatgaaaggCCTAGTCAAGGGCTTTCACTCTCTCTCAGTTCAAACAATCCTTCGAGTATTGACATACAATCTTTCGAACTCAGGCAAACTAATCACCACCTGCAGCACCaatatgattttgtttcttcaactAGTAGAGATGGTTTCTATGGAAAAGAGGCCAACACTCAGCAGCAACAACAAATGTTGCAAGATGGGTATTTGGGTAAATCTGCTGTAAACCTTTATCATGGACAAGGACATTTCCTGCTCAAGAACTCCAAGTACTTGGTCCCAGCACAGGACCTTCTGAACGAGTTCTGCAGTCTTGAAACGAGGCCAGGTGATATATTAAAGCACAAGTCTCAAAAGAACAAGCAGTCGGAAGAGGATAGCGACAGCGGTTCCTCAAAGAAGCATGTGCTTAGCTCCTTAGAATTGGTAGAGTTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTGGACCGAAGATACAGGCATTACTGTAATCAGATGAAGGCCGTTGTGTCATCGTTCGAAGCAGTGGCTGGGCATGGAGCTGCGGGTGTGTACTCAGCGCTGGCTTTGAAAGCCATGTCAAGGCATTTTAGATGCTTGAAAGATGGGATTACAACAAAGGGCCTTCCAGCAAATGAGCATGATGGAAAGCCATCCATGGAGACCCCAACGTGGCCTTCCGAGAGATCCGTCTCCTTTCTTCGAGCTTGGCTTTTCGAGCATTTTCTCCACCCGTACCCAAGCGATGTtgataaacatattttagCCCGCCAAACCGGTCTCTCAAGAAGCCAGGTATCAAATTGGTTTATTAATGCAAGGGTGAGACTTTGGAAGCCAATGGTGGAAGAAATGTACTTAGAAGAAGTCAAGCAGCATGAAAACAATATGGCTTCCTCGGAGGGAGTCACCGATCCCGATGACAATAATCAGCAAAACCCATCCTTAAATCGACCTGAAGATGAGAAACCCACACCTGATCGACTCGTGCGAATTGACTCGGAATGTGTATCCTCCATCATAAATAACTCATCAGATCACAGGGATGATCCTATTGCAAAGAGCAGCAGAACCCTCCAAAACCAACACCATATACAGCAAGACCAATGCTTGGGGCGAGTCACAGACAGTACGTTTGGGTCCATGGAGCTTGATTTTTCATCATACAGTACCACTCACCACTCGGCTGGTGCTGGCATGGTTTCCTACTCCAATGAGAATTTCAACGCAGGTGGTGTATCACTGACTCTAGGGTTACAGCAACAAGGCGGAAGTGGGGTGAGCTTGGCTTTCCGATCGCCCACTCACGGTTCACTCTTGTACCCAAGGGAGCAAATGGAAGATTGTCAACCAGTTCAGTACTCGCTTTTGGACGGCGAAGGGCAAAATCTTCCCTACAGAAATTTGATGGGGGCACAGTTATTGCACGATTTGTCAGGATA 1904 0.4559 MARQLCEDKSRDLVSSSAGFCYSDVSSGSGNPTIQTQMVNQIQGFVSVSESDQDMFNLSSGMEIIGFSKNLQQQTETNPMMWKSFFAKPAPSSSKTANFYQHKEYNKPDFTSGISETTSDNLIVAPQDPASWQDSRLLVEDSSMRCVFPCEGNERPSQGLSLSLSSNNPSSIDIQSFELRQTNHHLQHQYDFVSSTSRDGFYGKEANTQQQQQMLQDGYLGKSAVNLYHGQGHFLLKNSKYLVPAQDLLNEFCSLETRPGDILKHKSQKNKQSEEDSDSGSSKKHVLSSLELVELQKRKTKLLSMLEEVDRRYRHYCNQMKAVVSSFEAVAGHGAAGVYSALALKAMSRHFRCLKDGITTKGLPANEHDGKPSMETPTWPSERSVSFLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEVKQHENNMASSEGVTDPDDNNQQNPSLNRPEDEKPTPDRLVRIDSECVSSIINNSSDHRDDPIAKSSRTLQNQHHIQQDQCLGRVTDSTFGSMELDFSSYSTTHHSAGAGMVSYSNENFNAGGVSLTLGLQQQGGSGVSLAFRSPTHGSLLYPREQMEDCQPVQYSLLDGEGQNLPYRNLMGAQLLHDLSG 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00130 634 Gene3D - 380 439 - -
Bva08g00130 634 SMART HOX_1 373 438 IPR001356 GO:0003677
Bva08g00130 634 MobiDBLite consensus disorder prediction 495 519 - -
Bva08g00130 634 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 1 359 - -
Bva08g00130 634 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 382 590 - -
Bva08g00130 634 Pfam Associated with HOX 236 359 IPR006563 -
Bva08g00130 634 SUPERFAMILY Homeodomain-like 378 441 IPR009057 -
Bva08g00130 634 MobiDBLite consensus disorder prediction 263 282 - -
Bva08g00130 634 ProSiteProfiles 'Homeobox' domain profile. 393 434 IPR001356 GO:0003677
Bva08g00130 634 Pfam Homeobox KN domain 391 430 IPR008422 GO:0003677|GO:0006355
Bva08g00130 634 CDD homeodomain 378 435 IPR001356 GO:0003677
Bva08g00130 634 MobiDBLite consensus disorder prediction 448 482 - -
Bva08g00130 634 MobiDBLite consensus disorder prediction 450 473 - -
Bva08g00130 634 MobiDBLite consensus disorder prediction 263 283 - -
Bva08g00130 634 Coils Coil 292 312 - -
Bva08g00130 634 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 359 - -
Bva08g00130 634 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 382 590 - -
Bva08g00130 634 SMART prehox3 230 360 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00130 Bva-Chr8 652400 656317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00130 134 632 Homeobox Transcription Factor Family AT5G41410 42.470 5.11e-105 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Bva08g00130 POX 2.3e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00130 - - tcc:18606572 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00130 08 652400 656317 Bva08g00130 08 652400 656317 BWGD
Bva08g00130 08 652400 656317 Bva08g00130 08 652400 656317 ECH