Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00119 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGGCTTTGGTCCCCTGAGGAAGATGAGAAACTCATCAAATACATTACCACCCACGGCTATGGCTGTTGGAGTGAAGTCCCAGAGAAAGCAGGGCTCCAAAGGTGTGGTAAGAGCTGTCGCCTGAGAtggattaattatttgagaCCTGATATTAGACGAGGCAGGTTTACTCCCGAGGAAGAGAAGTTAATCATAAGCCTTCACGGTGTCGTAGGCAACAGATGGGCTCACATAGCAAGCCACTTGCCCGGTAGAACTGACAACGAAATAAAGAACTACTGGAATTCTtggatcaaaaagaaaataagaaagacttCGGTGCCTTCAACCACCAATGCACAAAGTTTGGATCATACTCAATTCAATTATACTCCTAACCATCACCAATTAGAGTTTGGCAGTTCAGATAATCTAACCGCGAAGCCACCACAGGTTCAAGAAACCTTATTTTCTTCGACGACATGCCCACTATTTATGTTTGACACTAGTTCATTAGATGGGACAACAACAGAAAACAATAATGTTAATAATGTAAGATCAGCAGAGCTGTTCCATGATGGTGTGGGTTTGAGCTGCTCTTCATCAGAAACATGGAATATAAGCCAGCACCATTATGTCCAAGCACTTGCTCCTCCAGCGGTAACATTTACGACAGCAGCCATGGACTCTACGAATTATCTGCCTCCCTTGATAGAGAACGTGGATAACATGGTTCCCATTGAAGTACAGTCTTGTAGTATGGACGAGGAAGGAGAGATGGCGCTGGAATGTTTGCGGAGGCAGGCGCAGTTGAATGAATGGACGATAGAAACGCAGCAACAGTGTCCTAACTTTCTCTTCTGGGAAAACGTTGAAGGACAACTTGGTGGGGAAGAAATAGCATCAAATTCATCAAATATGGGAACAAAtgggctttcttcttttccatcGTCTTTGTG 980 0.4194 MGHHSCCNQQKVKRGLWSPEEDEKLIKYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSVPSTTNAQSLDHTQFNYTPNHHQLEFGSSDNLTAKPPQVQETLFSSTTCPLFMFDTSSLDGTTTENNNVNNVRSAELFHDGVGLSCSSSETWNISQHHYVQALAPPAVTFTTAAMDSTNYLPPLIENVDNMVPIEVQSCSMDEEGEMALECLRRQAQLNEWTIETQQQCPNFLFWENVEGQLGGEEIASNSSNMGTNGLSSFPSSL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00119 326 PANTHER MYB DOMAIN PROTEIN 55 1 325 - -
Bva08g00119 326 CDD SANT 69 112 IPR001005 -
Bva08g00119 326 Gene3D - 68 137 - -
Bva08g00119 326 Gene3D - 6 66 - -
Bva08g00119 326 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva08g00119 326 SMART sant 66 114 IPR001005 -
Bva08g00119 326 SMART sant 13 63 IPR001005 -
Bva08g00119 326 CDD SANT 17 61 IPR001005 -
Bva08g00119 326 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva08g00119 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva08g00119 326 MobiDBLite consensus disorder prediction 306 326 - -
Bva08g00119 326 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva08g00119 326 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Bva08g00119 326 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva08g00119 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva08g00119 326 PANTHER MYB TRANSCRIPTION FACTOR 1 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00119 Bva-Chr8 616193 618355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00119 1 315 MYB Transcription Factor Family AT1G63910 50.136 7.09e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva08g00119 Myb_DNA-binding 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00119 K09422 K02947 gmx:100803556 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00119 08 616193 618355 Bva08g00119 08 616193 618355 BWGD
Bva08g00119 08 616193 618355 Bva08g00119 08 616193 618355 ECH