Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00079 ATGACTGCGCCTCCGATCAAATACACAGAGCACTTGAACCACACTAAACTAGTGCGACCggcaaaagaaatgaagtgtCCGAGAGTCGTAAGAATATCTGTAACGGACAACGATTGCACCGACTCGTCCAGCGACGAAGAAGCCCACGAGACTTTCACACGCCACCACAGAGTGAGGAAGTTTGTTAACGAGATTACCATCGATTCTTGCTCCAGCGAAAACGATGCCGTTTCTCGGAGCAAGCTCATTAAAAGTTGTAGGACCAAGTCCACCGTCAACAGGGGTGGAGTTTCGGTGAGTCGCCGACAGTTGAAGGTTGCTTCTGGTAAGAAGTTTAGAGGTGTGAGACAGAGGCCCTGGGGAAAATGGGCGGCTGAGATCCGTGACCCTTTGCGACGTGTACGGCTGTGGTTAGGTACTTATGATACTGCCGAGGAAGCTGCCATGGTATACGACAACGCGGCTATTCAGCTACGCGGAGCTGATGCGCTCACCAATTTCTTAACGCCGCCAGCTAGGTGCTCGTTTTCCCCAGAGAAAAAGTCGGCTGTCAACCTTAGCAGTACCCCTGGAGAGGACACTCTCAACAACACCAAATTCTCTCCTAAATCTGTTCTTCAATGTTCGTCTGAGTCTTTATGGGAGGAAGCTGAATCTGTAACTACCAGAGATGATACGAATAGCAGTGAATCTCGAGAATTTCTGGATGAATCATGCGTCTCGGAGAATTTATCCGATTTTCCAGATGACTCCAACTTTGCTTCTATCTTTCCCAGTGacatatttgattttcagtGTTCGTTGCCTGATATATTTGACAACTGCAGTGTGCCAGAAACTATCTTCACCGAAGATTGCTCcgatatttttctcaattccAGTGACAATTTCAGTTTCTCCAGCTGGTATAGAGATGATCATTTCCAAGATATCGGCGATTTATTTGTCTCAGATCCCCTTGTTGCTCTTTG 971 0.4521 MTAPPIKYTEHLNHTKLVRPAKEMKCPRVVRISVTDNDCTDSSSDEEAHETFTRHHRVRKFVNEITIDSCSSENDAVSRSKLIKSCRTKSTVNRGGVSVSRRQLKVASGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGADALTNFLTPPARCSFSPEKKSAVNLSSTPGEDTLNNTKFSPKSVLQCSSESLWEEAESVTTRDDTNSSESREFLDESCVSENLSDFPDDSNFASIFPSDIFDFQCSLPDIFDNCSVPETIFTEDCSDIFLNSSDNFSFSSWYRDDHFQDIGDLFVSDPLVAL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00079 323 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Bva08g00079 323 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Bva08g00079 323 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Bva08g00079 323 CDD AP2 110 167 IPR001471 GO:0003700|GO:0006355
Bva08g00079 323 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Bva08g00079 323 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Bva08g00079 323 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 319 - -
Bva08g00079 323 Gene3D AP2/ERF domain 110 169 IPR036955 GO:0003700|GO:0006355
Bva08g00079 323 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 4 319 - -
Bva08g00079 323 SUPERFAMILY DNA-binding domain 111 168 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00079 Bva-Chr8 407324 408295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00079 1 323 AP2-EREBP Transcription Factor Family AT4G23750 42.980 1.19e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva08g00079 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00079 - - pvy:116145351 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00079 08 407324 408295 Bva08g00079 08 407324 408295 BWGD
Bva08g00079 08 407324 408295 Bva08g00079 08 407324 408295 ECH