Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00066 ATGAAGCTGTTGGAGGAGGAGCAGATGCAGAAGACTGCCATGGAATGGCTTGAACAGTATCTGCAATTCAAACAAGAGATAGAAaaagacaagaagaagaacaaGAAAGAGAAGGATCCGTTGAAACCAAAGCATTCCATGTCAGCCTTTTACCTGTTCACAAATGATAGGCGGGCAGCTCTTTTGGCGGCAAAGAACAGCGTCCTGGAGATTTCCAAGATTACAGCTGAAGAGTGGAAAAACATGACAGAAGAACCAAGGAGACCATATGAAGAGATAGCAAAGCAGAACAAGGAGAAATATGTTTA 308 0.4058 MKLLEEEQMQKTAMEWLEQYLQFKQEIEKDKKKNKKEKDPLKPKHSMSAFYLFTNDRRAALLAAKNSVLEISKITAEEWKNMTEEPRRPYEEIAKQNKEKYV 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00066 102 CDD HMGB-UBF_HMG-box 43 101 - -
Bva08g00066 102 Pfam HMG (high mobility group) box 43 101 IPR009071 -
Bva08g00066 102 SUPERFAMILY HMG-box 30 101 IPR036910 -
Bva08g00066 102 SMART hmgende2 42 101 IPR009071 -
Bva08g00066 102 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 101 - -
Bva08g00066 102 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 101 IPR044601 GO:0003677
Bva08g00066 102 MobiDBLite consensus disorder prediction 82 102 - -
Bva08g00066 102 Gene3D High mobility group box domain 26 102 IPR036910 -
Bva08g00066 102 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 43 102 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00066 Bva-Chr8 351581 354465 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bva08g00066 HMG_box 5.4e-12 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00066 K09273 - gmx:100814709 142.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00066 08 351581 354465 Bva08g00066 08 351581 354465 ECH