Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00038 ATGCTCTTTCGGGCTAAGATGCTGACTTTTGCcgtagaaagaaagaatagtcTTGGAGATTCAGAGATTGATCGAAACTGGGCTTGCCTAACCATCTTCGATTTTTTGGGGTTGCGGTCTCTCCCAGTTACAGATTCTAATTTTAGGTTGGACACTGAAATGGAAGCGGATTTCTTCACCAGTGGAGTGATCAGAGAAGATGCTTTTGAAGCTGGTGATACGAACAATAACcAGGATAATTTAGTTATTGACGGGGAAAGATGTGGAATATGCATGGATGTTGTTGTTGACAGGGGAGTTCTAGATTGCTGTCAGCACTGGTTCTGTTTTGTTTGCATTGACAACTGGGCTACCATCACGAATCTTTGCCCACTTTGCCAGAATGAGCTTCAGTTAATAACATGTGTTTCAGTATATGATACTATTGGAAACAATAAAGTTGAAGATGGTGCATTCTCTAGAGATGATGACTGGTCAATTGAAGGGAAGAACGACACTCTGTCATTCCCCTCATACTATATCGATGAAAATGCAGTCATATGCTTGAATGACGATGGGTGCAAAATCCGAAGTGGATCAGCTACTATTGAAGGAGATTCCGGTCTTGATACATCAATTGCTTGTGATTCATGTGATATATGGTATCATGCTTTTTGTGTGGGATTTGATCCTGAAGGTACATCAGACATTACATGGTTATGCCCAAGATGTGTGACTAATGATGTTCCTAAAAGAACAGATACCAATTCAACTGAGAGGGCAAACATGGAAGGTGACCTAGACAATGCTAATAATGAATGTCAGACAGAGAGTTCTCTTTTAGGAAAAGTGTCTGTTTCTGTTGCTGATACTGGAGAGACAGCTGTTGTTGTCTCGATGGTTGAAGGAAACCAATTGATTCCAGCATCAAGCAAGAAATGCTCACCGTCCCTTGAAGTTGACAAGGATCAAATGAAGGAATCATGTGTTTCCATGTACAACACAAGTAATCACCAGAGCCAGacagagaataaaattatttcaccaATCATGAAGGAACAGGATCTGGAGCTGTCCTTGTCACACAATATATCCTACAACCTACCTTCTAACTCCTTGGTGCATGATGATTTAAGTGCTCAACCAGTAAGAAGTGAATTAAGTAGTTTTGATGCAACCAAGTTATGTAATGAATCCCATGTTGGAGCTAGTCCACCAAGAAATGAATCTGATTTCGGTCTTCATCTTGGTTTCTCAGTGGGCTCTTTTTTGTCTgTTGATGATCTGGACAAGAATGATAGAAAAGGTCTTGTAACTGATGTCCAGCGGTCAAATCCAGAAGAATCTTTGTTAAAAGgAGATGAAATCGAACCCAATGCGTGTACGGACAATGCTAGAGTGGCAGGTGGAAAGAGAAAGCATGTTGGTCATAGtaTTGATCAAGTTCGCATAGAAGTTGATGGTAAAGTTGCCACACCTGAAGTTGAAGTTTCTCAGAAGAAAATCAGAGCTGAGGCCACTCAAGTGATTAATCCCAAGGACTCAGCTGATGCTTCTAGTTTAGATAATGATCAAAATAGCCCCCGCATTGCAGCTGATTCCAGAGGTGATGATTTTAAACATTGTCTTGTAGAGGAGAACATTTCATCAGATATAATAAATATCGTTAAAGGGACGAACCGGAGGCTTCCCGATAAAGTTTCTGGCACTAATGCTCATGATAAGTTgtctaaaaataaagaaaacatggtaGGGTTGAGAGTGAAAAAGATCATGAAGAGAGCTTCTGATGACGGGGAATCGTCCTTGGTGGTTCAAAATCTAAGGAAAGAAATTAGAGAAGTCGTCCGTAACAAATCCTCTGAAAGTTTTGAGGAGAACATTTTTGATCCAAAGCTTCTTGCAGCATTTAGGGCTGCCATAACAGGACCCAAAACTGAACCGGGAAATAAGCTATATCCTTTAGCCTTGAAAGCAAAGAAATCAATGTTGCAGAAAGGGAAAATACGTGAACATCTAACCAGGAAAATATTCGCTGATTCAAACGGAAGAAGGAAGCGAGCTTGGGACAGGGACtgtgaaattgaattttggagATATCGTTGCATGAGAACTACAAAAcctgaaaaaattgaaactttgaagTCAGTTCTTGATGTTCTGAGAAAGAATTCGGAGAGTCCACAATCAAAACAGGGTTCTGAATCTCAGCTTAACAATCCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCGCGGAAAGATGACGTCAAACCTCTGTCAGCACTTGAAAGTGCTTCGAATTCCGAGCAGAATAAACAGCACAACCCatcaggaaaaggaaaaggatcaaatctatatattaataatagtacTATTAAAGCAACAGAAGCAAATAATGTTGTATCTAAGGCAGGAGTTCGCTCGTCTgaatataaagtaaataagaAGATTGTACCTGGCTCATTTGGTGATTCTTCAACTTCTGGTTCACATTCAAGCAGTAACCCAAAAAGGACATCAATTACGTGCACTGGTGAGGAAGTAGGTGCTAAATCAAATGCtataaaaagtgataaaagaaaatgggccTTAGAGGTTCTTGCTAGGAAAACAGCTGCTGGAAGCGGAAAAACAGCAAATGAAAGTCAGAAATACGATGCAGTTCTCAAAGGAAATTATCCTTTACTTGCCCAATTGCCACCTGATATGAGACCAGTTCTGGCACCTAGTCGCCACAACAAAATTCCTATATCTGTGAGGCAGACACAGCTTTACCGTCTGACAGAGCACTTGTTGAGAAAGATTAATCTGCCAGTCATTCGTAGAACTGCAGATACAGAATTGGCTGTGGCAGATGCAATTAATATTGAGAAGGAAGTTGCTGACAAGTCAAACAGTAAGCTTGTGTATCTGAACCTCTGTTCACAAGAGATCTTGCATCGCACAAATAACAGAAAATCCCATGAATCTAATGATGCGAATCCATCAATCACATCAGCAGTCCTCACTGTTAGATCAGAAGAAAATGCTTATGAAAATTCAACGGACCCTGCTGTTGAGGAAGCGCTGAAAAATGCTGGTCTTTTGTCTGATTCACCTCCTAATAGTCCCCACGAGAAGAGGGAACTATGCAATAATGAAGATGATCTGCCAGGGcctgataatatatttgaactGGATTCTCATCCAGAGCTAGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGTGCTAGTGTTGCAAAGAACAAAAACTCACAGCAAGATGACTGTGGgtcaaaaatgaaacttgtttTCTCTACCATGAACTTGAAAAAGTCTGATGCTGCTTTTGATTGTGTGAACAACGAGAGATCTGAAAACAAAGAAGTGTCATGTAATGCCTCCTGCTCACCGAATTCTCACGGTGACGCCAGCCATGGGAACTGCACAATTGGTGCAGAAGTTGACAAGGCTTCTGATACTCTTCTTAGCGAGGGAGCTGTTGAGCCATTTGACGcagaatttgaagaattatATGGCCCCGACAAGGAACCACTCGCGAAAAAGTTTCCAGATGGGGattcaagaaaattacaagGAGATGGCCAGATAGAAAATGGCGGtcatattaaagaaaaacatgtcTTAGAACAAGAAATGAATGCATCAGGTAGTTCATCCGGTCatgacattttatttaatgtatctGGGACTAGTGATAATTTCCAAAGGAAGGTAGAGAAATCTGATGCAACTGCCAAGCAATATGACTGTGTAAATAATGTATCGAAGAAGGTAGAAGCCTTCGTGAAGGAGCATATCAGGCCCTTGTGCAAGAGTGGTGTGATCACAGTCGAACAATATAGATGGGCAATTGCTAAAACAACTGATAAGGTTATGAAGTACCATTGCAAAGCCAAGAATGCCAACTTCCTCGTAAAGGAAGGTGACAAAGTGAAGAAACTAGCACAGCAGTACGTTGAGGCAGCCCAACAGaatacaaaaaattg 3998 0.3817 MLFRAKMLTFAVERKNSLGDSEIDRNWACLTIFDFLGLRSLPVTDSNFRLDTEMEADFFTSGVIREDAFEAGDTNNNQDNLVIDGERCGICMDVVVDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNELQLITCVSVYDTIGNNKVEDGAFSRDDDWSIEGKNDTLSFPSYYIDENAVICLNDDGCKIRSGSATIEGDSGLDTSIACDSCDIWYHAFCVGFDPEGTSDITWLCPRCVTNDVPKRTDTNSTERANMEGDLDNANNECQTESSLLGKVSVSVADTGETAVVVSMVEGNQLIPASSKKCSPSLEVDKDQMKESCVSMYNTSNHQSQTENKIISPIMKEQDLELSLSHNISYNLPSNSLVHDDLSAQPVRSELSSFDATKLCNESHVGASPPRNESDFGLHLGFSVGSFLSVDDLDKNDRKGLVTDVQRSNPEESLLKGDEIEPNACTDNARVAGGKRKHVGHSIDQVRIEVDGKVATPEVEVSQKKIRAEATQVINPKDSADASSLDNDQNSPRIAADSRGDDFKHCLVEENISSDIINIVKGTNRRLPDKVSGTNAHDKLSKNKENMVGLRVKKIMKRASDDGESSLVVQNLRKEIREVVRNKSSESFEENIFDPKLLAAFRAAITGPKTEPGNKLYPLALKAKKSMLQKGKIREHLTRKIFADSNGRRKRAWDRDCEIEFWRYRCMRTTKPEKIETLKSVLDVLRKNSESPQSKQGSESQLNNPILSRLYLADTSVFPRKDDVKPLSALESASNSEQNKQHNPSGKGKGSNLYINNSTIKATEANNVVSKAGVRSSEYKVNKKIVPGSFGDSSTSGSHSSSNPKRTSITCTGEEVGAKSNAIKSDKRKWALEVLARKTAAGSGKTANESQKYDAVLKGNYPLLAQLPPDMRPVLAPSRHNKIPISVRQTQLYRLTEHLLRKINLPVIRRTADTELAVADAINIEKEVADKSNSKLVYLNLCSQEILHRTNNRKSHESNDANPSITSAVLTVRSEENAYENSTDPAVEEALKNAGLLSDSPPNSPHEKRELCNNEDDLPGPDNIFELDSHPELDIYGDFEYDLEDEDYIGASVAKNKNSQQDDCGSKMKLVFSTMNLKKSDAAFDCVNNERSENKEVSCNASCSPNSHGDASHGNCTIGAEVDKASDTLLSEGAVEPFDAEFEELYGPDKEPLAKKFPDGDSRKLQGDGQIENGGHIKEKHVLEQEMNASGSSSGHDILFNVSGTSDNFQRKVEKSDATAKQYDCVNNVSKKVEAFVKEHIRPLCKSGVITVEQYRWAIAKTTDKVMKYHCKAKNANFLVKEGDKVKKLAQQYVEAAQQNTKN 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00038 1332 PANTHER RING/U-BOX PROTEIN 158 1329 - -
Bva08g00038 1332 MobiDBLite consensus disorder prediction 505 523 - -
Bva08g00038 1332 MobiDBLite consensus disorder prediction 1024 1046 - -
Bva08g00038 1332 SMART ring_2 88 126 IPR001841 -
Bva08g00038 1332 SMART ring_2 178 237 IPR001841 -
Bva08g00038 1332 MobiDBLite consensus disorder prediction 814 839 - -
Bva08g00038 1332 Pfam PHD-finger 203 238 IPR019787 -
Bva08g00038 1332 MobiDBLite consensus disorder prediction 817 839 - -
Bva08g00038 1332 Pfam Ring finger domain 87 127 IPR001841 -
Bva08g00038 1332 MobiDBLite consensus disorder prediction 759 783 - -
Bva08g00038 1332 ProSitePatterns Zinc finger RING-type signature. 104 113 IPR017907 -
Bva08g00038 1332 ProSiteProfiles Zinc finger RING-type profile. 88 127 IPR001841 -
Bva08g00038 1332 MobiDBLite consensus disorder prediction 1179 1202 - -
Bva08g00038 1332 ProSiteProfiles Zinc finger PHD-type profile. 120 240 IPR019787 -
Bva08g00038 1332 SMART PHD_3 186 238 IPR001965 -
Bva08g00038 1332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 166 IPR013083 -
Bva08g00038 1332 MobiDBLite consensus disorder prediction 1179 1195 - -
Bva08g00038 1332 SUPERFAMILY RING/U-box 79 133 - -
Bva08g00038 1332 MobiDBLite consensus disorder prediction 499 527 - -
Bva08g00038 1332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 243 IPR013083 -
Bva08g00038 1332 PANTHER RING FINGER PROTEIN 41, 151 158 1329 - -
Bva08g00038 1332 SUPERFAMILY FYVE/PHD zinc finger 202 244 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00038 Bva-Chr8 210596 221670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00038 88 148 C3H Transcription Factor Family AT3G58030 36.508 1.46e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva08g00038 PHD 5.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00038 - - gmx:100808102 1571.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00038 08 210596 221670 Bva08g00038 08 210596 221670 ECH