Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00012 ATGTCTTCATCATCGCTCGAGTGTTTGGAGAAAGAAGGCTCTACCGCACTGGAGCAGAATCTCCAATTCCTTGTGCAGAGCTGCCCCGAGTACTGGTGGGTGTACACCATCTTTTGGCAAGCTTCCAAAGATATTGGTGCTGGCCGCGTATTATTACATTGGGGCCATGGCCACTTTCGAGGTAGCCATGGCAACGACTACACGGACAGATCATTGCAGGTGCTGGACCGCCATGTCACTGCCTCTGAATGGTTTTACACGTTATCCATGACGCGATCCTTTGGCGCAGGTGATGCTAACATACTTGGCCGCGCTTTTAGCTCTGCTACTGATGTCTGGTTGGTTGGATTGAATGAATTTCAGTTGGAAGAATACTGTGACAGAGTTAGAGAGGCTCGCAGCCATGGCATCCAAACTTTAGTATGCATTCCCACTGCAAATGGAGTACTAGAACTGGGTTCTACGGACTTGATCAAGCAGGACTGGGGCCTCGTGCGATTGgccaaatcaatttttatgacTGCAACTAATGATGCGGCAGCAGTTTCCCTTTGCGAAAGTATTGCAGTGACTGTCCCCTTTGTCCAGAAAGAGACCGtgttaaaacataaaaataattataagctGCGAAAGAAGACACTGGTTAACATACAAGAAGCGGAGAATGGATCATCTTCCTCCGATTCTGGACAAGGACATGAAGATTATGCTACAAGGAGGCGAGGCAGATCGAGAAAGGCAGCATCAGAAATATTAATGCCTCCGAATCACGTGGAGGCAGAGAGGCAGCGACGAGAGAGACTTAATCAAAGATTCTATGCTCTCCGCTCCGTTGTTCCCAACGTATCCAAGATGGACAAAGCTTCCCTCCTTTCAGATGCTGTGGCCTACATCAATCAACTCAAGGCCAAGACTGAGCAGCTCCAGCTCAAAGCCAAGTTCCCCAAACATGAACATGAACAACCCTCACACTCGCAGTCATCAACTTGTCTTCCTCTACCCAATAACAACAACATTTCTTCCAATACCATAGCAGTTGAGGTCAAGATCGTGGGCATGGATGCCATGATAAGGGTTCAGTGCCTCGATGTGAATCACCCATCTGCAAGGTTGATGGATGCTCTGAGAGATCTCAATTTGCAAATTCATCATGCCAGCATATCTAGCGTCAAAGACCTCATGCTACAAGACGTTGTGGTTAGAGTTCCTCATGACCTCATGAACGAGGACGTAATGAAAAGTGCTATTTTCCAAAGGTTgcagaatta 1268 0.459 MSSSSLECLEKEGSTALEQNLQFLVQSCPEYWWVYTIFWQASKDIGAGRVLLHWGHGHFRGSHGNDYTDRSLQVLDRHVTASEWFYTLSMTRSFGAGDANILGRAFSSATDVWLVGLNEFQLEEYCDRVREARSHGIQTLVCIPTANGVLELGSTDLIKQDWGLVRLAKSIFMTATNDAAAVSLCESIAVTVPFVQKETVLKHKNNYKLRKKTLVNIQEAENGSSSSDSGQGHEDYATRRRGRSRKAASEILMPPNHVEAERQRRERLNQRFYALRSVVPNVSKMDKASLLSDAVAYINQLKAKTEQLQLKAKFPKHEHEQPSHSQSSTCLPLPNNNNISSNTIAVEVKIVGMDAMIRVQCLDVNHPSARLMDALRDLNLQIHHASISSVKDLMLQDVVVRVPHDLMNEDVMKSAIFQRLQN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00012 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 324 IPR036638 GO:0046983
Bva08g00012 422 SMART finulus 258 307 IPR011598 GO:0046983
Bva08g00012 422 MobiDBLite consensus disorder prediction 314 334 - -
Bva08g00012 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983
Bva08g00012 422 Pfam Helix-loop-helix DNA-binding domain 256 302 IPR011598 GO:0046983
Bva08g00012 422 PANTHER MYC 13 421 IPR045084 GO:0003700|GO:0006355
Bva08g00012 422 MobiDBLite consensus disorder prediction 220 252 - -
Bva08g00012 422 Gene3D - 253 317 IPR036638 GO:0046983
Bva08g00012 422 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 17 172 IPR025610 -
Bva08g00012 422 MobiDBLite consensus disorder prediction 233 247 - -
Bva08g00012 422 PANTHER TRANSCRIPTION FACTOR MYC2-LIKE 13 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00012 Bva-Chr8 77473 78915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00012 17 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 35.280 7.45e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva08g00012 bHLH-MYC_N 4.7e-37 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00012 - K13422 tcc:18605970 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00012 08 77473 78915 Bva08g00012 08 77473 78915 ECH