Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva08g00010 | ATGGCCGACGATGACAAAAAGCGGAGGCGAAGCTTCCATCTTTGTGATAGTTTCAACTCCCCAGCTCCGGCCCTTGTAGTGGATGACGACGGCGACAACCGGCGACCAAGCACTCCATCTGCGATTCCGGCGACTCAGAACAAGATCCGATGGGGGGAGCTAGAGGAGGACGACGGAGAGGATCTCGACTTTTTGCTGCCGCCGCGGCAGGTGATAGGTCCAGATGAGAACGGGATAAAGAAGGTGATTGAGTACAAATTCGATGAAGATGGCAATAAGGTGAAGATTACTACCACCACTCGCACTCGCAAGCTCACTAATGCTCGCCTCAGTAAGCGTGCCATTGAGAGGCGATCCTGGGCTAAGTTTGGTGATTTTGTTCACGAGGATGTTGGTAGCAGGCTCACCATGGTTTCCACTGAGGAAATCCTCCTCGAGCGACCTAGGGCTCCAGGTAGCAAGGCAGAGGAACCAAAGGCTGTTGGAGACCCATTGGCTCAATTCCAGAAAGGTGGTGGTGCTGTTCTCATGGTTTGTAGGACTTGTGGTAAGAAGGGTGATCACTGGACATCAAGGTGTCCTTACAAGGATCTTGCCCCACCAGCTGAAGGGTTTGTTGATAAGCCTGCTGCAGCAGAAGCTGCAACTGCTGCTTCTGGTTCCAAAGCATATGTTCCTCCTGGTTTGAGAGGAGGAGTTCAAGATAGGTCCGGCTCAGACATGCGAAGAAGGAACGACGAAAATTCTGTCCGGGTCACCAACCTCTCTGAGGATACAAGAGAGCCCGATTTGCTTGAGTTGTTCCGTCCTTTCGGTGCAATGAGCAGAGTCTATGTTGCTGTTGATCAGAAGACTGGCATGAGCAGAGGATTTGGTTTTGTTAACTTTGTAAACAGGGAAGATGCACAGAGGGCCATTAACAAGCTCAATGGATATGGTTACGACAATCTCGTCCTTAGAGTTGAATGGGCGACGCCAAGAACAAACTA | 989 | 0.5086 | MADDDKKRRRSFHLCDSFNSPAPALVVDDDGDNRRPSTPSAIPATQNKIRWGELEEDDGEDLDFLLPPRQVIGPDENGIKKVIEYKFDEDGNKVKITTTTRTRKLTNARLSKRAIERRSWAKFGDFVHEDVGSRLTMVSTEEILLERPRAPGSKAEEPKAVGDPLAQFQKGGGAVLMVCRTCGKKGDHWTSRCPYKDLAPPAEGFVDKPAAAEAATAASGSKAYVPPGLRGGVQDRSGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAMSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLVLRVEWATPRTN | 329 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva08g00010 | 329 | MobiDBLite | consensus disorder prediction | 218 | 247 | - | - | |
| Bva08g00010 | 329 | MobiDBLite | consensus disorder prediction | 18 | 50 | - | - | |
| Bva08g00010 | 329 | Coils | Coil | 328 | 329 | - | - | |
| Bva08g00010 | 329 | CDD | RRM_eIF3G_like | 249 | 324 | IPR034240 | - | |
| Bva08g00010 | 329 | SUPERFAMILY | RNA-binding domain, RBD | 237 | 328 | IPR035979 | GO:0003676 | |
| Bva08g00010 | 329 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 250 | 319 | IPR000504 | GO:0003723 | |
| Bva08g00010 | 329 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 46 | 329 | - | - | |
| Bva08g00010 | 329 | Pfam | Eukaryotic translation initiation factor 3 subunit G | 70 | 198 | IPR024675 | - | |
| Bva08g00010 | 329 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 248 | 326 | IPR000504 | GO:0003723 | |
| Bva08g00010 | 329 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 46 | 329 | - | - | |
| Bva08g00010 | 329 | SMART | rrm1_1 | 249 | 322 | IPR000504 | GO:0003723 | |
| Bva08g00010 | 329 | PIRSF | Transl_init_eIF-3_RNA-bind | 40 | 329 | IPR017334 | GO:0003743|GO:0005737|GO:0005852 | |
| Bva08g00010 | 329 | CDD | eIF3G | 77 | 197 | IPR024675 | - | |
| Bva08g00010 | 329 | Gene3D | - | 207 | 329 | IPR012677 | - | |
| Bva08g00010 | 329 | Hamap | Eukaryotic translation initiation factor 3 subunit G [EIF3G]. | 48 | 328 | IPR017334 | GO:0003743|GO:0005737|GO:0005852 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva08g00010 | Bva-Chr8 | 62464 | 65373 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva08g00010 | 47 | 327 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 67.834 | 2.25e-149 | 421 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva08g00010 | K03248 | - | qsu:112022532 | 492.271 |