Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02532 ATGAACCCAGATATGTCATCCGCAGCGGCATCCTATTGGTGTTATAGGTGTACCCGGTTTGTTCGCCTTTTGAGTCAGGAACACATCGCCTGCCCCCACTGTGAGAGTGGCTTCATCGAAGAGATCGAAACCAACCCCTCCTCTGATGATCCTCTCGGTCCGTTTCCAGCTTCCGCTTTTTCCATGTTGGGCGATAGCGCTTCAACCTCCTATAATTTAAGGAGACATGGGTTCCGGAGAAGACGCCGCAACGCGGGGAGCCGGTCTTCCTTTAACCCAGTAATCGTTCTGCGTGGACCCGCTGAAGAGGACGGTGCTGATCACGAAAGGAATAGCTTCGAATTGTACTATGACGACGGAGATGGCTCCGGTCTCCGGCCATTACCACCGACCATGTCCGAGTTTTTATTGGGATCAGGTTTCGATCGGTTGCTGGAACAGTTTTCCCAGATCGAAGTCAACGGGTTTGGGCGCCCGGAGAACCCGCCAGCGTCTAAAGCGGCCGTAGAATCAATGCCGACGATTGAGATTGTGGAGGACCATGTGGGTACCGATGCACACTGTGCCGTATGCAAGGAAGCGTTTGAACTGGGCTCGGAGGCTCGTGAAATGCCCTGCAAGCACATTTACCATTCGGACTGTATTCTTCCGTGGCTTTCTTTGCGCAATTCATGTCCCGTGTGTCGCCACCAACTGCCTTCGGATCAAGATTCATTGGAAAGTAGAATATCAGGGCCAATCGATGAAGAAACTGTGGGATTGACGATATGGAGGTTACCCGGTGGTGGATTTGCCGTGGGAAGGTTTTCTGGTGGTCGTAGAGCTGGCGAAAGCCATTTACCGGTTGTATACACAGAAATGGATGGCGGGGTTAATTCAAATGAGGCTCCCAGAAGAATTTCCCGAGCCGTTAGTGGCAGCAGAGTTAGTGAAAGTCGTGGGCTTGGCAGAATTTTCCGCAACTTGTTATCATTATTTGGGAGGCGTCGGTCTAGGTCAAATTCTTCTTCGTCTTCGTCTTCAATTTCTAGTTCTGAACATGGGTCCATGAGTAGAGGCCATAGCCAGTCGAGTTTTGTGTTCAGTAGGAACTCACGGAGGCGAGACAGAACTTGGGTCTTGGAAGATTG 1130 0.5115 MNPDMSSAAASYWCYRCTRFVRLLSQEHIACPHCESGFIEEIETNPSSDDPLGPFPASAFSMLGDSASTSYNLRRHGFRRRRRNAGSRSSFNPVIVLRGPAEEDGADHERNSFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFSQIEVNGFGRPENPPASKAAVESMPTIEIVEDHVGTDAHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHQLPSDQDSLESRISGPIDEETVGLTIWRLPGGGFAVGRFSGGRRAGESHLPVVYTEMDGGVNSNEAPRRISRAVSGSRVSESRGLGRIFRNLLSLFGRRRSRSNSSSSSSSISSSEHGSMSRGHSQSSFVFSRNSRRRDRTWVLED 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02532 376 Pfam Protein of unknown function (DUF1117) 252 366 IPR010543 -
Bva07g02532 376 SUPERFAMILY RING/U-box 168 235 - -
Bva07g02532 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 315 - -
Bva07g02532 376 PANTHER OS05G0110000 PROTEIN 7 315 - -
Bva07g02532 376 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Bva07g02532 376 SMART ring_2 188 228 IPR001841 -
Bva07g02532 376 Pfam Ring finger domain 187 229 IPR001841 -
Bva07g02532 376 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Bva07g02532 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Bva07g02532 376 CDD RING-H2_RNF126_like 188 229 - -
Bva07g02532 376 MobiDBLite consensus disorder prediction 330 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02532 Bva-Chr7 20196948 20198542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02532 127 240 C3H Transcription Factor Family AT5G01980 43.860 1.03e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02532 - - aip:107612938 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00114 09 529398 531599 Bva07g02532 07 20196948 20198542 BWGD
Bva07g02532 07 20196948 20198542 Bva07g02532 07 20196948 20198542 ECH
Bva09g00114 09 529398 531599 Bva07g02532 07 20196948 20198542 ECH
Bva02g01393 02 17502227 17504026 Bva07g02532 07 20196948 20198542 ECH