Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02516 ATGGCTGTGGCTATGGCTATGGCTATGGCTGTGCTCTGCATTGCCTCTCTCGTCTCAGTAATGTTCACGGTGATGGTTGAAGCTAGAATTCCCGGGGTTTACAGAGGGGGAGCTTGGCAAAGCGCTCATGCTACCTTCTACGGAGGTTCTGATGCTTCTGGCACCATGGGTGGCGCTTGCGGGTATGGAAACCTGTACAGCCAAGGGTACGGTGTGAACACGGCGGCATTGAGCACGGCACTTTTCAACAATGGTCTGAGCTGCGGTGCCTGTTTCGAGATCAAGTGTGCAAATGACAGACAATGGTGTCACTCCGGCGGTCCATCCATCTTTATTACGGCCACTAACTTCTGCCCGCCCAATTATGCTCTTCCAAACGACAATGGCGGATGGTGCAACCCTCCTCGTCCGCACTTTGACCTTGCCATGCCCATGTTCCTTAAGATTGCAGAGTACCGCGCCGGAATTGTCCCCGTAGCCTATCGCCGGGTGCCATGCAGAAAGCACGGTGGGATCAGGTTCACGATCAACGGCTTCCGTTACTTTAACCTGGTATTGATCAGCAACGTGGCGGGCGCAGGGGATCTCGTGAGAGCTTACGTTAAGGGGTCGAGGACAGGGTGGATGCCCTTGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAGCGCAGTTCTGGTGGGCCAGTCATTGTCGTTCAGGGTCACAGGCAGCGACAGGCGCACTTCGACCTCATGGAACATCGTTCCAGCCAATTGGCAATTCGGTCAAACTTTTACTGGCAAGAATTTTCGTGTTTG 797 0.542 MAVAMAMAMAVLCIASLVSVMFTVMVEARIPGVYRGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDRQWCHSGGPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKHGGIRFTINGFRYFNLVLISNVAGAGDLVRAYVKGSRTGWMPLSRNWGQNWQSSAVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNFRV 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02516 265 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Bva07g02516 265 Gene3D - 171 263 IPR036749 -
Bva07g02516 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 260 IPR007117 -
Bva07g02516 265 SUPERFAMILY Barwin-like endoglucanases 38 189 IPR036908 -
Bva07g02516 265 PANTHER EXPANSIN-A15 9 264 IPR002963 GO:0009664
Bva07g02516 265 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
Bva07g02516 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 171 IPR007112 -
Bva07g02516 265 PANTHER EXPANSIN 9 264 - -
Bva07g02516 265 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Bva07g02516 265 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Bva07g02516 265 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Bva07g02516 265 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Bva07g02516 265 PRINTS Expansin signature 96 107 IPR002963 GO:0009664
Bva07g02516 265 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Bva07g02516 265 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Bva07g02516 265 PRINTS Expansin signature 217 238 IPR002963 GO:0009664
Bva07g02516 265 PRINTS Expansin signature 246 262 IPR002963 GO:0009664
Bva07g02516 265 Pfam Lytic transglycolase 74 161 IPR009009 -
Bva07g02516 265 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Bva07g02516 265 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
Bva07g02516 265 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Bva07g02516 265 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Bva07g02516 265 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Bva07g02516 265 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Bva07g02516 265 Gene3D - 26 167 IPR036908 -
Bva07g02516 265 SMART dpbb_1 74 161 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02516 Bva-Chr7 20111578 20114156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02516 5 265 Expansin Gene Family AT2G39700 82.375 1.39e-164 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02516 - - gmx:100809139 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00130 09 603259 605684 Bva07g02516 07 20111578 20114156 BWGD
Bva07g02516 07 20111578 20114156 Bva07g02516 07 20111578 20114156 ECH
Bva07g02516 07 20111578 20114156 Bva12g02409 12 18230183 18232078 ECH
Bva09g00130 09 603259 605684 Bva07g02516 07 20111578 20114156 ECH
Bva02g01369 02 17363664 17365945 Bva07g02516 07 20111578 20114156 ECH
Bva01g00503 01 3933603 3936310 Bva07g02516 07 20111578 20114156 ECH