Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02503 ATGGAGGATGAAAAGGGAGGATTAGTACAAAGCTTGATTAACTTGGTGAATGAGATTGCTGTGATCTCAGATTACAGATATACAGTAAAGAAGCAATGCTGCAATTTGGCCAGAAGACTGAAGCTCTTGACTCCAATGTTTGAAGAGATTAGAGACAGCAAAGAGGCCCTCCTTCAAGATACTTTAAAAGTTTTCGTTTCCTTGAAGGAAGCTCTAGAATCGGCCAAGCAGCTTCTCAGATTTGGTAGTGAGGGAAGCAAGATTTACATGGTTCTAGAGAGGGAccaaattatgaataaattcCATGACGTGACAACCCGGTTGGAACATGCCCTGAGTAAAATTTCCTACGATAAACTTGACATATCCGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTTGCCCAGTTCAGAAGAGCCAAAGGAAGGGTTGACACACCGGATGTTGAGTTGCATGAGGATCTTGTATCTCTTTACAACAAGAACAATGACGCAGCTACAGATCCAGCTGTTCTAAAGAGATTAGCTGAAAAACTGCAATTGATGGGAATATCTGATCTCACACATGAGTCACTAGCTTTGCATGAGATGGTGACAACAAGTGGTGGGGATCCAGGGTCAAGCATTGAGAAGATGTCAATGctgttgaagaaaataaaagattatgtGCAAACTGAAAATCTAGTCATGGATGATACTGTCGGAGGAAAAGGCATTTCATCAAGTTGCAGCAAACAAGggacaaatgaaaaaaatcatCAGTCCCCTGTTATCCCTGATGATTTTCGATGTCCGATATCCCTGGAATTGATGAAAGATCCTGTCATTGTATCAACAGGACAGACCTATGAGCGCTCTTGTATAGAAAAGTGGTTGGAAGCTGGGCATGGAACATGTCCAAAAACACAGCAGACACTCACTAGTACTGTTTTAACACCCAATTATGTGTTAAGGAGCCTCATAGCTCAGTGGTGTGAAGCCAATGGCATAGAACCACCAAAACGGCCCAGCAGTTCTCGACTAAGTAAATCAACATCCTCTTGCTCACCTGCTGAGCGTAGCAAGATTGAAAATCTTCTCCGCAAGCTTACATCTGGAAATCCTGAAGACAAGAGATCAGCTGCAGGTGAGATCCGCCTTCTTGCAAAGCGCAATGCAGATAATCGTGTAGCCATTGCTGAAGCCGGTGCAATCCCTGTCCTTGTCGGCCTCCTCTCAACGCCTGACTCCCGCACCCAAGAGCATGCTGTGACAGCACTTCTGAATCTTTCTATATGTGAGAATAACAAAGGAAGTATTATATCTTCTGGAGCTGTTCCTGGTATAGTTCATGTGCTCAAGAAGGGCAGCATGGAAGCTCGGGAAAATGCAGCAGCAACACTGTTCAGCCTTTCAGTCATAGATGAAAATAAGGTTACAATTGGTTCTTCAGGAGCCATCCCACCACTAGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAGGGTAACAAAGGAAAAGCAGTGAGGGCTGGGGTTATTCCCACACTGATGCGACTGCTGACAGAACCTGGGGGTGGAATGGTGGATGAAGCATTGGCCATTTTGGCAATATTGGCTAGCCACCCCGAGGGGAAGGCTGCGATTGGTGCTGTAGAGGCAGTGCCAGCTTTGGTAGAGGTTATTGGGAATGGTTCCCCAAGGAACAAAGAGAATGCAGCTGCAGTTTTAGTGCACCTTTGTTCTGGAGATCAACAATATATAGCACAGGCCCAAAAGCTAGGTGTGATGGATCCGTTGTTGGATTTGGCTCACAATGGCACAGACAGAGGCAAAAGAAAGGCTGCACAATTACTAGAGCGTATAAACAGGTTCAATgagcagcagcaacagcaacagcaGGAGGAAGTTCAAACACAAACTGAACTTGAAGCTCAGAACTTGGATACACGATCACTTTCTCTTACTAACCATGTTGATAACTA 2006 0.4322 MEDEKGGLVQSLINLVNEIAVISDYRYTVKKQCCNLARRLKLLTPMFEEIRDSKEALLQDTLKVFVSLKEALESAKQLLRFGSEGSKIYMVLERDQIMNKFHDVTTRLEHALSKISYDKLDISDEVKEQVELVLAQFRRAKGRVDTPDVELHEDLVSLYNKNNDAATDPAVLKRLAEKLQLMGISDLTHESLALHEMVTTSGGDPGSSIEKMSMLLKKIKDYVQTENLVMDDTVGGKGISSSCSKQGTNEKNHQSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSSSRLSKSTSSCSPAERSKIENLLRKLTSGNPEDKRSAAGEIRLLAKRNADNRVAIAEAGAIPVLVGLLSTPDSRTQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPGGGMVDEALAILAILASHPEGKAAIGAVEAVPALVEVIGNGSPRNKENAAAVLVHLCSGDQQYIAQAQKLGVMDPLLDLAHNGTDRGKRKAAQLLERINRFNEQQQQQQQEEVQTQTELEAQNLDTRSLSLTNHVDN 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02503 668 Coils Coil 622 653 - -
Bva07g02503 668 SUPERFAMILY RING/U-box 248 334 - -
Bva07g02503 668 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Bva07g02503 668 CDD RING-Ubox_PUB 262 304 IPR045210 -
Bva07g02503 668 Gene3D - 508 653 IPR011989 -
Bva07g02503 668 Gene3D - 7 118 IPR036537 GO:0007166
Bva07g02503 668 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Bva07g02503 668 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Bva07g02503 668 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Bva07g02503 668 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Bva07g02503 668 SMART arm_5 467 507 IPR000225 GO:0005515
Bva07g02503 668 SMART arm_5 591 631 IPR000225 GO:0005515
Bva07g02503 668 SMART arm_5 426 466 IPR000225 GO:0005515
Bva07g02503 668 SMART arm_5 549 589 IPR000225 GO:0005515
Bva07g02503 668 SMART arm_5 385 425 IPR000225 GO:0005515
Bva07g02503 668 SMART arm_5 508 548 IPR000225 GO:0005515
Bva07g02503 668 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 556 IPR000225 GO:0005515
Bva07g02503 668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 333 IPR013083 -
Bva07g02503 668 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Bva07g02503 668 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 647 - -
Bva07g02503 668 SUPERFAMILY ARM repeat 356 639 IPR016024 -
Bva07g02503 668 PANTHER U BOX DOMAIN-CONTAINING 6 647 - -
Bva07g02503 668 MobiDBLite consensus disorder prediction 332 353 - -
Bva07g02503 668 MobiDBLite consensus disorder prediction 335 353 - -
Bva07g02503 668 Gene3D - 337 495 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02503 Bva-Chr7 20048151 20052604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02503 1 657 U-box Gene Family AT3G46510 71.342 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02503 - - pvy:116146246 1030.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g02503 07 20048151 20052604 Bva07g02503 07 20048151 20052604 ECH