Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02489 ATGGAAAGGGGGAGCGGTCGGCTTTTCCGGAGGACTCCCTTGGCCCGATTACTATGCACGCGCTCAGCGTCCACGAAATTATTCATTGGAGGGCTTTCCTATGATACTAATGAAACCGTTCTCAAGGATGCTTTTGGGCATTGTGGTGAAATCATTGAAGTCAGGGTTATATGTGATCACATGTCCGGGAAATCAAAAGGGTATGGATTCGTGCGGTTTAGTTCTAAAACTGCTTCCGAAAGAGCTCTAAAAGAAATGGACGGTCAGGTGCTCGATGGCAGAAATATTCGCGTACATTATGCACGCCATGCCTA 314 0.4713 MERGSGRLFRRTPLARLLCTRSASTKLFIGGLSYDTNETVLKDAFGHCGEIIEVRVICDHMSGKSKGYGFVRFSSKTASERALKEMDGQVLDGRNIRVHYARHA 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02489 104 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Bva07g02489 104 SMART rrm1_1 26 99 IPR000504 GO:0003723
Bva07g02489 104 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Bva07g02489 104 SUPERFAMILY RNA-binding domain, RBD 23 102 IPR035979 GO:0003676
Bva07g02489 104 CDD RRM_SF 27 99 - -
Bva07g02489 104 Gene3D - 12 104 IPR012677 -
Bva07g02489 104 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 7 103 - -
Bva07g02489 104 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 7 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02489 Bva-Chr7 19974582 19975605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02489 11 98 Eukaryotic Initiation Factors Gene Family AT4G34110 31.818 2.43e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02489 K13195 - mnt:21385436 143.28