Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02480 ATGAAAATGGTTCACCAAGACATCAGAAAAGGTCCGTGGACAGAACAAGAGGACCTCAAATTGGTCAACTTTGTTGGCTTGTTTGGGGACCGGAGATGGGATTTTATAGCCAAAGTTTCAGGTTTGAAGGTGGAGGGAGAAGGTATGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACTTGCATCCCGGTCTCAAAAGAGGGAAGATGACGCCCCAAGAAGAGCGCCTCGTGCTGGAACTTCACCAAAAATGGGGAAATAGATGGTCAAGAATTGCTCATAAATTACCAGGGCGTACAGATAATGAGATTAAGAATTACTGGAGAACTCACATGAGGAAGAAGGCTCAGGAGAAAAAGCAAGCACACGCACTCACTCCATCATCAACATCTTCTAGTTGTCATTCCTCGTTATCATCAGAAAACCATACGGTGGACTCATATCCTTCCAAAAAGACAGGAGAAGAAAGCTTTTATGACACAGGAGGAGCCAGTAAGACAGCCCCCGTAGGAGTGAAGTTAGGAGAAGAGCAACAGAGTGAACAGGGTTACTCCATGGATGATATATGGAAAGATATCGAAATCTCAGAAGAGAATATTCTACTGCCAGTATATGATAGGCGCAGTGAAGAGTGCTGCAACATCTCCTGTCCTCCCATGCCTTCTCCATCATGGGAATATTCTTCGGACACGCTATGGGTGatggatgaagaagaaaTGCTTTTACTTTCAGCAGAAAAGGGGAATCACATGAAACCTCAAGTAGGAAGataTACACATCCAGACCACTTCAAAGTAGTAAGGAAAAGCCATGACAAATTGAGAATTCCTCGTCTTGGTTTTGCAGTTACAAATCCAGATTACTTCTGCGGTTCTGCCACATA 893 0.4311 MKMVHQDIRKGPWTEQEDLKLVNFVGLFGDRRWDFIAKVSGMNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHQKWGNRWSRIAHKLPGRTDNEIKNYWRTHMRKKAQEKKQAHALTPSSTSSSCHSSLSSENHTVDSYPSKKTGEESFYDTGGASKTAPVGVKLGEEQQSEQGYSMDDIWKDIEISEENILLPVYDRRSEECCNISCPPMPSPSWEYSSDTLWVMDEEEMLLLSAEKGNHMKPQVGRYTHPDHFKVVRKSHDKLRIPRLGFAVTNPDYFCGSAT 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02480 290 CDD SANT 65 108 IPR001005 -
Bva07g02480 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Bva07g02480 290 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 5 240 - -
Bva07g02480 290 MobiDBLite consensus disorder prediction 109 165 - -
Bva07g02480 290 CDD SANT 12 57 IPR001005 -
Bva07g02480 290 MobiDBLite consensus disorder prediction 118 143 - -
Bva07g02480 290 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Bva07g02480 290 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 240 IPR044676 GO:0003700|GO:0006355|GO:0043565
Bva07g02480 290 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Bva07g02480 290 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
Bva07g02480 290 Gene3D - 10 62 - -
Bva07g02480 290 Gene3D - 65 135 - -
Bva07g02480 290 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
Bva07g02480 290 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bva07g02480 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 57 IPR017930 -
Bva07g02480 290 SMART sant 9 59 IPR001005 -
Bva07g02480 290 SMART sant 62 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02480 Bva-Chr7 19927831 19930335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02480 1 235 MYB Transcription Factor Family AT5G59780 59.494 1.58e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva07g02480 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02480 K09422 - vvi:100260318 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g02480 07 19927831 19930335 Bva09g00161 09 760202 761193 BWGD
Bva07g02480 07 19927831 19930335 Bva07g02480 07 19927831 19930335 ECH