Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02476 ATGTCTTCTTCGGCGGAGCCACCGGAACCTTGGGCTTGGAGGTCCCAAGAGGTGGCCTCAGTTGTTGTAGTCTGCATCTTGTTTCTTATACTGAGTTACTGCAGCATACTTAAGCGTCTCTTCCGTATTGCTACTTCCCACAGAAACCAGGGTCGAAGGCGACTTCTGGATGAGTCTACTGCTGATGATCCTTCTTCTGTACAGTTTCAAAGTTATGGGCTGGAAGTCTCTATCATAAACTCTCTTCCCATGTCTCAATTTAAGAAAAGTGACGAGGAGAAGGCAAGTAACACAGACTGCGCAATTTGCTTGGGTGAGTTTGAAGAAGGCGAATGGCTAAAACATCTTCCTAATTGCAACCATGTTTTCCATGTTTCCTGCATTGACACTTGGTTTCGGTCTCACTCAAATTGCCCTCTCTGCAGATCTCATGCCCATTGTCACCTCACAGATAACTA 458 0.4585 MSSSAEPPEPWAWRSQEVASVVVVCILFLILSYCSILKRLFRIATSHRNQGRRRLLDESTADDPSSVQFQSYGLEVSIINSLPMSQFKKSDEEKASNTDCAICLGEFEEGEWLKHLPNCNHVFHVSCIDTWFRSHSNCPLCRSHAHCHLTDN 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02476 152 SMART ring_2 100 141 IPR001841 -
Bva07g02476 152 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 15 145 IPR044675 -
Bva07g02476 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 147 IPR013083 -
Bva07g02476 152 SUPERFAMILY RING/U-box 87 146 - -
Bva07g02476 152 Pfam Ring finger domain 99 142 IPR001841 -
Bva07g02476 152 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Bva07g02476 152 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 145 - -
Bva07g02476 152 CDD RING-H2_PA-TM-RING 99 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02476 Bva-Chr7 19912199 19913447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02476 8 143 C3H Transcription Factor Family AT1G72220 35.762 1.44e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02476 - - gmx:121172630 181.415